miRNA display CGI


Results 41 - 60 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 9089 0.67 0.894867
Target:  5'- ---aGGCGGCGGCGCGAagaCGGcgcCUCGg -3'
miRNA:   3'- gacgCCGUCGUCGUGCU---GCUuu-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 10742 0.7 0.771269
Target:  5'- -gGCGGCaacGGCGGCgACGcgccugcGCGAGACUCc -3'
miRNA:   3'- gaCGCCG---UCGUCG-UGC-------UGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 12024 0.66 0.935484
Target:  5'- cCUGCucggcguccGGCAGCAcGCACGcCGAcGACgUCGc -3'
miRNA:   3'- -GACG---------CCGUCGU-CGUGCuGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 12895 0.81 0.261204
Target:  5'- -aGCGGCgcucggugcccccggGGCGGCGCGGCGAGcGCUCGa -3'
miRNA:   3'- gaCGCCG---------------UCGUCGUGCUGCUU-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 13279 0.73 0.590658
Target:  5'- -gGCGGCGGaggccuCGGCGCGGCGggGCguccgCGu -3'
miRNA:   3'- gaCGCCGUC------GUCGUGCUGCuuUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 13841 0.66 0.930406
Target:  5'- -cGCgGGCAGCgGGCGCccGGCGGguagugcagcAGCUCGa -3'
miRNA:   3'- gaCG-CCGUCG-UCGUG--CUGCU----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 14382 0.7 0.799035
Target:  5'- -gGCGGCgcaccagguauacGGcCAGCACGACGAcGC-CGg -3'
miRNA:   3'- gaCGCCG-------------UC-GUCGUGCUGCUuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 14528 0.68 0.851005
Target:  5'- uUG-GGCGGCAGCugGgccGCGAccgcgggggcgGGCUCGu -3'
miRNA:   3'- gACgCCGUCGUCGugC---UGCU-----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 14754 0.69 0.826277
Target:  5'- -cGCGGCuGCuccgGGgGCGACGAcacGCUCGc -3'
miRNA:   3'- gaCGCCGuCG----UCgUGCUGCUu--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 15204 0.72 0.642129
Target:  5'- gCUGCGGCAGgcgcgcucCAGCACGGCGuaguACaCGg -3'
miRNA:   3'- -GACGCCGUC--------GUCGUGCUGCuu--UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 16134 0.7 0.781594
Target:  5'- -gGCGacGCAGCuGCGCGAcCGGGACaUCGa -3'
miRNA:   3'- gaCGC--CGUCGuCGUGCU-GCUUUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 16701 0.66 0.948847
Target:  5'- --cCGGCGGguGCGCGagcgaccGCGggGC-CGg -3'
miRNA:   3'- gacGCCGUCguCGUGC-------UGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 17530 0.67 0.910119
Target:  5'- -cGCGGCGGaaGGgGCGACGGucggggcggacgcugGGCUCGc -3'
miRNA:   3'- gaCGCCGUCg-UCgUGCUGCU---------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 18435 0.66 0.939847
Target:  5'- -cGCGGCgggggccgcguccGGUGGCGCGGCGGgggGGCgCGg -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUGCU---UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 18853 0.66 0.925086
Target:  5'- --cCGGUGGCGGUACuGCGAAACgaggCGg -3'
miRNA:   3'- gacGCCGUCGUCGUGcUGCUUUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 19034 0.67 0.894867
Target:  5'- -cGCgGGCGGCAGCcucucggccgcgGCGGcCGAGACcgCGg -3'
miRNA:   3'- gaCG-CCGUCGUCG------------UGCU-GCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 19163 0.7 0.799938
Target:  5'- -cGCGGCGGCGGCGCccccaGAAACcuUCa -3'
miRNA:   3'- gaCGCCGUCGUCGUGcug--CUUUG--AGc -5'
21499 5' -54.8 NC_004812.1 + 19426 0.68 0.888113
Target:  5'- -cGCcGCAGCAGCcuCGccucgugcACGGAGCUCGc -3'
miRNA:   3'- gaCGcCGUCGUCGu-GC--------UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 19597 0.72 0.693391
Target:  5'- -gGgGGCuuGCAGcCGCGGCGAAucGCUCGc -3'
miRNA:   3'- gaCgCCGu-CGUC-GUGCUGCUU--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 19703 0.71 0.743348
Target:  5'- -gGCGGCGcGCGGCGcCGGCGAccGGCcgUCGg -3'
miRNA:   3'- gaCGCCGU-CGUCGU-GCUGCU--UUG--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.