miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 19878 0.66 0.935484
Target:  5'- -aGCGucucCAGCGGCGCGGCGGcggggGACgCGg -3'
miRNA:   3'- gaCGCc---GUCGUCGUGCUGCU-----UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 20031 0.78 0.366071
Target:  5'- -cGCGGCAaaacagguagaGCAGCACGugGAGGCggucgCGg -3'
miRNA:   3'- gaCGCCGU-----------CGUCGUGCugCUUUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 20113 0.7 0.781594
Target:  5'- -cGCGcGCAGCGGCGCG-CGggGgagCGg -3'
miRNA:   3'- gaCGC-CGUCGUCGUGCuGCuuUga-GC- -5'
21499 5' -54.8 NC_004812.1 + 21084 0.66 0.949272
Target:  5'- -cGCGGCGGCcGagGCGGCGAAgacGC-CGa -3'
miRNA:   3'- gaCGCCGUCGuCg-UGCUGCUU---UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 21221 0.67 0.913718
Target:  5'- -aGCGGCAGaAGUcucgcgGCGACGGGAcCUCc -3'
miRNA:   3'- gaCGCCGUCgUCG------UGCUGCUUU-GAGc -5'
21499 5' -54.8 NC_004812.1 + 21803 0.76 0.434699
Target:  5'- -aGCGGCGGCAGaagcggGCGGCGAu-CUCGg -3'
miRNA:   3'- gaCGCCGUCGUCg-----UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 22916 0.67 0.901388
Target:  5'- cCUGCGGgGGCGGaGCGugGGGucgCGg -3'
miRNA:   3'- -GACGCCgUCGUCgUGCugCUUugaGC- -5'
21499 5' -54.8 NC_004812.1 + 23423 0.68 0.858854
Target:  5'- -gGCGGCGuCGGCgACGACGguGgUCGg -3'
miRNA:   3'- gaCGCCGUcGUCG-UGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 23498 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 23587 0.66 0.935484
Target:  5'- -gGCGGCGcGCcGCGgGGCGggGgUUGg -3'
miRNA:   3'- gaCGCCGU-CGuCGUgCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 24844 0.67 0.901388
Target:  5'- -cGCGGCacgcgccgcgGGCGGCGCGgcuGCGggGgcgucCUCGa -3'
miRNA:   3'- gaCGCCG----------UCGUCGUGC---UGCuuU-----GAGC- -5'
21499 5' -54.8 NC_004812.1 + 25019 0.66 0.940319
Target:  5'- -gGUGGCGGgGGUugG-CGAAgauggGCUCGc -3'
miRNA:   3'- gaCGCCGUCgUCGugCuGCUU-----UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 25071 0.74 0.580426
Target:  5'- -cGCGGCGGCgGGCuccuCGACGggGCggCGc -3'
miRNA:   3'- gaCGCCGUCG-UCGu---GCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 25637 0.74 0.580426
Target:  5'- -aGCGGaaCAGCAGCGCGcggGCGGccGGCUCGu -3'
miRNA:   3'- gaCGCC--GUCGUCGUGC---UGCU--UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 25781 0.67 0.919523
Target:  5'- -gGCGGCgccccGGCGGacgaCGCGcucGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-----UCGUC----GUGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 25849 0.68 0.858854
Target:  5'- -cGCGGCGGCcgacucGGCGCGccccgacggccGCGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUCG------UCGUGC-----------UGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 26105 0.74 0.546963
Target:  5'- gUGgGGCGGCAGCGCGuccgggaucGCGAccgccgaccacccgGGCUCGa -3'
miRNA:   3'- gACgCCGUCGUCGUGC---------UGCU--------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 26199 0.66 0.946686
Target:  5'- -gGCGGCGcGUAGUccGCcagcaggcucugggaGGCGGGACUCGa -3'
miRNA:   3'- gaCGCCGU-CGUCG--UG---------------CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 27432 0.67 0.901388
Target:  5'- uUGCaGGgagaagccCAGUAGCACGAUGAGGC-CGc -3'
miRNA:   3'- gACG-CC--------GUCGUCGUGCUGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 28535 0.66 0.935484
Target:  5'- --cCGGCGGCAGCgaGCGGCccGACcUCGg -3'
miRNA:   3'- gacGCCGUCGUCG--UGCUGcuUUG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.