miRNA display CGI


Results 81 - 100 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 28843 0.67 0.894867
Target:  5'- gCUGCGGgGGCGGgACuuugggGGCGAccgcgcgaccaAGCUCGa -3'
miRNA:   3'- -GACGCCgUCGUCgUG------CUGCU-----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 29582 0.71 0.722599
Target:  5'- -gGCGGCGGCAugcccucGCGCGGCGgcGCgggcCGg -3'
miRNA:   3'- gaCGCCGUCGU-------CGUGCUGCuuUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 29782 0.71 0.743348
Target:  5'- -aGgGGCGG-GGCGCGGCGggGCcCGg -3'
miRNA:   3'- gaCgCCGUCgUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 29916 0.74 0.570231
Target:  5'- -gGUGGCGGCGGCgACGGCGAcGGCgCGa -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCU-UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 29923 0.72 0.649342
Target:  5'- -cGCGGCccgcggguggagcgAGCAGCACGACG--GCgUCGa -3'
miRNA:   3'- gaCGCCG--------------UCGUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 30168 0.68 0.888113
Target:  5'- -aGcCGGgAGC-GCGCGGCG-GGCUCGg -3'
miRNA:   3'- gaC-GCCgUCGuCGUGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 30226 0.68 0.888113
Target:  5'- gUG-GGgGGCGcGCGCgGGCGggGCUCGc -3'
miRNA:   3'- gACgCCgUCGU-CGUG-CUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 30407 0.7 0.799938
Target:  5'- -cGCGGCGGCcuucaGGCACG-UGAAGgUCa -3'
miRNA:   3'- gaCGCCGUCG-----UCGUGCuGCUUUgAGc -5'
21499 5' -54.8 NC_004812.1 + 30954 0.68 0.851005
Target:  5'- -cGCGggcGCGGCGGCGCGGCGccACgcgCGc -3'
miRNA:   3'- gaCGC---CGUCGUCGUGCUGCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 31095 0.66 0.930406
Target:  5'- cCUGCgGGUGGCAuuGgGCGGCGggGCg-- -3'
miRNA:   3'- -GACG-CCGUCGU--CgUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 31648 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 32498 0.67 0.913124
Target:  5'- -gGCGGCguaccgcguugucGGCGGCACGA----GCUCGu -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUgcuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 33474 0.7 0.790839
Target:  5'- cCUGCGGCGGaCGGC-CGACcucuuccuGGccGACUCGu -3'
miRNA:   3'- -GACGCCGUC-GUCGuGCUG--------CU--UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 33762 0.66 0.944466
Target:  5'- cCUGCGGgcccucacgggcuCGGCGGC-CGACGAca-UCGc -3'
miRNA:   3'- -GACGCC-------------GUCGUCGuGCUGCUuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 35056 0.67 0.892865
Target:  5'- -aGCGGaugccgcgcgccacCAGCcGCGCGACGAu-CUCGc -3'
miRNA:   3'- gaCGCC--------------GUCGuCGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 35474 0.66 0.949272
Target:  5'- -cGCGGCGuCGGCGCG-CGAGAUcccCGa -3'
miRNA:   3'- gaCGCCGUcGUCGUGCuGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 35581 0.67 0.913718
Target:  5'- -gGCGGCGGgGGCAccCGACGGcGAC-CGc -3'
miRNA:   3'- gaCGCCGUCgUCGU--GCUGCU-UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 35847 0.68 0.858854
Target:  5'- uUGC-GCAGCAGCGCGGgGucGCUgGc -3'
miRNA:   3'- gACGcCGUCGUCGUGCUgCuuUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 35922 0.68 0.88113
Target:  5'- -gGCGGCAGUGGgGCGgcagGCGggGCa-- -3'
miRNA:   3'- gaCGCCGUCGUCgUGC----UGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 36016 0.74 0.549982
Target:  5'- gCUGCGGUGGCGG-GCGGCG-AugUCGg -3'
miRNA:   3'- -GACGCCGUCGUCgUGCUGCuUugAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.