miRNA display CGI


Results 101 - 120 of 396 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 36160 0.66 0.925086
Target:  5'- -gGCGGCgcagGGguGCGCGGgGucGCUCu -3'
miRNA:   3'- gaCGCCG----UCguCGUGCUgCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 36167 0.69 0.817665
Target:  5'- -cGCGGCAGgGGCACGGaggcgggggGAGGCcCGg -3'
miRNA:   3'- gaCGCCGUCgUCGUGCUg--------CUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 36227 0.7 0.775982
Target:  5'- -cGCGGCAGgGGCACGGaggcggggggaggccCGGgagaggcggcaGACUCGg -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU---------------GCU-----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 36734 0.69 0.842954
Target:  5'- uCUGCGGgcCGGCGGCGCGcuCGGGAggCGg -3'
miRNA:   3'- -GACGCC--GUCGUCGUGCu-GCUUUgaGC- -5'
21499 5' -54.8 NC_004812.1 + 37229 0.68 0.888113
Target:  5'- -cGCGGCcguuguGCAGCAUGGCGuuGAGCg-- -3'
miRNA:   3'- gaCGCCGu-----CGUCGUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 37399 0.66 0.925086
Target:  5'- gUGCaGCAGCGGCcGCG-CGAGAaggCGg -3'
miRNA:   3'- gACGcCGUCGUCG-UGCuGCUUUga-GC- -5'
21499 5' -54.8 NC_004812.1 + 37678 0.71 0.747254
Target:  5'- -gGgGGCAGCAGCGCcgcgucccgcaucagGugGuuGAGCUCGg -3'
miRNA:   3'- gaCgCCGUCGUCGUG---------------CugC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 37740 0.67 0.901388
Target:  5'- -gGCGGCGGCccucGCGguCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGu---CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 38371 0.71 0.713594
Target:  5'- cCUGCaGGCgGGCGGCGgGGCccgccgGGAGCUCGg -3'
miRNA:   3'- -GACG-CCG-UCGUCGUgCUG------CUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 38437 0.7 0.766524
Target:  5'- -gGCGGCgaugcgcggggacggGGgAGCGCGGgGAGACUCu -3'
miRNA:   3'- gaCGCCG---------------UCgUCGUGCUgCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 38536 0.68 0.86574
Target:  5'- -cGCGGCGGCcggggucGGgGCG-CGAAGCUgCGg -3'
miRNA:   3'- gaCGCCGUCG-------UCgUGCuGCUUUGA-GC- -5'
21499 5' -54.8 NC_004812.1 + 38643 0.67 0.910119
Target:  5'- -aGCGGgggguugaacagcccCAGgGGCAUGACGAAGgUCa -3'
miRNA:   3'- gaCGCC---------------GUCgUCGUGCUGCUUUgAGc -5'
21499 5' -54.8 NC_004812.1 + 38826 0.68 0.866495
Target:  5'- gCUGCGGCGcGCgccGGCGCGGCcggGggGCgCGu -3'
miRNA:   3'- -GACGCCGU-CG---UCGUGCUG---CuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 39275 0.7 0.799938
Target:  5'- -gGCGGCcgccggGGCccgggguccgggGGCGCGGCGggGgCUCGg -3'
miRNA:   3'- gaCGCCG------UCG------------UCGUGCUGCuuU-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 39281 0.73 0.621509
Target:  5'- -gGCaGCAGCAGCGCcaggGGCGggGCUUu -3'
miRNA:   3'- gaCGcCGUCGUCGUG----CUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 39444 0.66 0.935484
Target:  5'- -cGcCGGuCAGCAGgGCGAUGGc-CUCGg -3'
miRNA:   3'- gaC-GCC-GUCGUCgUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 41139 0.67 0.919523
Target:  5'- -cGCGGCcGCAcgcGCGCGGCGAGcCcagCGg -3'
miRNA:   3'- gaCGCCGuCGU---CGUGCUGCUUuGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 41880 0.73 0.611207
Target:  5'- gCUGCGGCAGUGGCAgugguaGACGAcGC-CGu -3'
miRNA:   3'- -GACGCCGUCGUCGUg-----CUGCUuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 42182 0.68 0.888113
Target:  5'- -gGCGGCgAGCGGgccCugGGCGAGGCgUCu -3'
miRNA:   3'- gaCGCCG-UCGUC---GugCUGCUUUG-AGc -5'
21499 5' -54.8 NC_004812.1 + 43626 0.67 0.894867
Target:  5'- -gGCGGCcGCGGCGCcGCGAuccaUCGc -3'
miRNA:   3'- gaCGCCGuCGUCGUGcUGCUuug-AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.