miRNA display CGI


Results 121 - 140 of 396 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 43842 0.66 0.940319
Target:  5'- -cGCGGCucGCGGCGcCGACGuccgGGCgCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGU-GCUGCu---UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 44189 0.68 0.88113
Target:  5'- uCUGCGGCGGgGGUggggcucgGCGGCGgcGCggaCGg -3'
miRNA:   3'- -GACGCCGUCgUCG--------UGCUGCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 44295 0.72 0.671954
Target:  5'- -cGCGGcCAGCcgcccgaGGCGCGACucGAGCUCGg -3'
miRNA:   3'- gaCGCC-GUCG-------UCGUGCUGc-UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 44725 0.69 0.834709
Target:  5'- -gGCGGgGGUcccgggAGCACGA-GggGCUCGu -3'
miRNA:   3'- gaCGCCgUCG------UCGUGCUgCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 45329 0.69 0.816795
Target:  5'- -gGCGGUcuuguugacguacAGCAGCuggcccggguuGCGGgGAAACUCGg -3'
miRNA:   3'- gaCGCCG-------------UCGUCG-----------UGCUgCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 46588 0.73 0.610177
Target:  5'- -cGCGGCcggguagcacaggAGCGGCGCGACGGggUggCGa -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUGCUuuGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 46673 0.72 0.646252
Target:  5'- -gGgGGCAGCuccgcuccgauaugaGGCGCGACGgcGCUCu -3'
miRNA:   3'- gaCgCCGUCG---------------UCGUGCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 46692 0.69 0.826277
Target:  5'- -aGUGGCc-CAGCGCGACGugcagccGCUCGa -3'
miRNA:   3'- gaCGCCGucGUCGUGCUGCuu-----UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 47602 0.66 0.944466
Target:  5'- -cGCGGCgaccccgAGCGcGC-CGACG-GGCUCGg -3'
miRNA:   3'- gaCGCCG-------UCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 47879 0.73 0.589633
Target:  5'- cCUGCagcaGGUAGUAGCGCGccacggcACGAGGCUCu -3'
miRNA:   3'- -GACG----CCGUCGUCGUGC-------UGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 48235 0.7 0.75887
Target:  5'- -cGCGGCccagggccuccuGCAGCGCGGCGAcgucguccgcgcGCUCGa -3'
miRNA:   3'- gaCGCCGu-----------CGUCGUGCUGCUu-----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 48299 0.72 0.642129
Target:  5'- -cGCGGCGGUGGC-CGAgGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUgCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 48647 0.68 0.873922
Target:  5'- gUGCgGGCGGCuGUACGugGGccaucgccacuACUCGg -3'
miRNA:   3'- gACG-CCGUCGuCGUGCugCUu----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 49348 0.69 0.842954
Target:  5'- -cGCGGCGGUcgAGC-UGACGcAGCUCu -3'
miRNA:   3'- gaCGCCGUCG--UCGuGCUGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 49810 0.72 0.693391
Target:  5'- cCUGCcgGGCAGcCAGCGCGugGggG-UCa -3'
miRNA:   3'- -GACG--CCGUC-GUCGUGCugCuuUgAGc -5'
21499 5' -54.8 NC_004812.1 + 50441 0.67 0.913718
Target:  5'- cCUGCGGCgcgaGGCcGC-CGAgGccGAGCUCGg -3'
miRNA:   3'- -GACGCCG----UCGuCGuGCUgC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 53004 0.73 0.621509
Target:  5'- -gGCGGCuGUAGCACGuccCGggGCgcgCGg -3'
miRNA:   3'- gaCGCCGuCGUCGUGCu--GCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 53053 0.75 0.500451
Target:  5'- -cGCGGCAGCuGCACcgccaGGCGgcGCUCa -3'
miRNA:   3'- gaCGCCGUCGuCGUG-----CUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 54081 0.66 0.944915
Target:  5'- -aGCGGUAGCGcGCACccgauACGcAAACUCc -3'
miRNA:   3'- gaCGCCGUCGU-CGUGc----UGC-UUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 54531 0.66 0.944915
Target:  5'- cCUGCGGUccgucuucgggGGCGGCGacucCGACGgcGC-CGg -3'
miRNA:   3'- -GACGCCG-----------UCGUCGU----GCUGCuuUGaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.