miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 148931 0.68 0.858854
Target:  5'- -gGCGGCGuCGGCgACGACGguGgUCGg -3'
miRNA:   3'- gaCGCCGUcGUCG-UGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 148528 0.66 0.930406
Target:  5'- -gGCGGCgcgGGCcgccgGGCGCGGCGggG-UCGc -3'
miRNA:   3'- gaCGCCG---UCG-----UCGUGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 148424 0.67 0.901388
Target:  5'- cCUGCGGgGGCGGaGCGugGGGucgCGg -3'
miRNA:   3'- -GACGCCgUCGUCgUGCugCUUugaGC- -5'
21499 5' -54.8 NC_004812.1 + 148289 0.71 0.74139
Target:  5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 148190 0.7 0.753081
Target:  5'- -gGCGGCGGCcuccGGUACGGcCGggGC-CGa -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 147633 0.66 0.949272
Target:  5'- uCUGCGcGcCAGUgGGCGCGACGA--UUCGu -3'
miRNA:   3'- -GACGC-C-GUCG-UCGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 147573 0.68 0.888113
Target:  5'- -cGCGGCcGC-GUACGGCauGGCUCGg -3'
miRNA:   3'- gaCGCCGuCGuCGUGCUGcuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 147501 0.69 0.806216
Target:  5'- -gGCGGCgagggggacggcgaGGCGGC-CGGCGAAACgacCGa -3'
miRNA:   3'- gaCGCCG--------------UCGUCGuGCUGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 146613 0.69 0.826277
Target:  5'- -gGCGGCAGCAccuccuccacGCgacaGCGGCGuucguACUCGg -3'
miRNA:   3'- gaCGCCGUCGU----------CG----UGCUGCuu---UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 146428 0.67 0.913718
Target:  5'- -cGgGGCAGCAGUugcgaaccGCGGCGAggAugUUGc -3'
miRNA:   3'- gaCgCCGUCGUCG--------UGCUGCU--UugAGC- -5'
21499 5' -54.8 NC_004812.1 + 146295 0.7 0.781594
Target:  5'- gUGCGGaugggaCGGCAGCA-GACGgcGCUCa -3'
miRNA:   3'- gACGCC------GUCGUCGUgCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 145783 0.69 0.834709
Target:  5'- gUGcCGGaAGCAGCGCGAgCGccucGGGCUCGg -3'
miRNA:   3'- gAC-GCCgUCGUCGUGCU-GC----UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 145511 0.67 0.894867
Target:  5'- uCUGCaGGCucuuGUGGCugGGCG--GCUCGc -3'
miRNA:   3'- -GACG-CCGu---CGUCGugCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 145313 0.67 0.907672
Target:  5'- -cGCGGCGccccgcGCGGCGCGccucguggGCGu-GCUCGg -3'
miRNA:   3'- gaCGCCGU------CGUCGUGC--------UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 144971 0.68 0.851005
Target:  5'- -cGCGGCgAGCGuCugGACGGAGCg-- -3'
miRNA:   3'- gaCGCCG-UCGUcGugCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 144402 0.81 0.246509
Target:  5'- -gGCGGCgugguacgAGCGGCGCGACGGcGGCUCGg -3'
miRNA:   3'- gaCGCCG--------UCGUCGUGCUGCU-UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 144052 0.81 0.233075
Target:  5'- gUGCGGCGGCGGCACGccgccgggggccugGCGGAGCUg- -3'
miRNA:   3'- gACGCCGUCGUCGUGC--------------UGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 143618 0.69 0.829671
Target:  5'- -gGCGGCGGCgagAGCGCGagcgcggccccgggcGCGGAGCgcgCGu -3'
miRNA:   3'- gaCGCCGUCG---UCGUGC---------------UGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 143249 0.66 0.949272
Target:  5'- -aGCaaGCAGCAGCugGugGugGCgCGg -3'
miRNA:   3'- gaCGc-CGUCGUCGugCugCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 142492 0.66 0.944915
Target:  5'- -gGCuGGCGGCGuucacGCACGGCGc-GCUCc -3'
miRNA:   3'- gaCG-CCGUCGU-----CGUGCUGCuuUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.