miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 133476 0.68 0.873922
Target:  5'- gUGCGcCAGCAGCAgGACGGugaUCu -3'
miRNA:   3'- gACGCcGUCGUCGUgCUGCUuugAGc -5'
21499 5' -54.8 NC_004812.1 + 132877 0.66 0.944915
Target:  5'- aUGUGGCGGaagaAGCGgGuGCGguGCUCGc -3'
miRNA:   3'- gACGCCGUCg---UCGUgC-UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 131010 0.69 0.808883
Target:  5'- -gGCGGCGGCGGCcGCGGgGAAGg-CGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUgCUUUgaGC- -5'
21499 5' -54.8 NC_004812.1 + 130857 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 130828 0.77 0.425716
Target:  5'- gCUGCGGCGGgGGCugACGACGGc-CUCGa -3'
miRNA:   3'- -GACGCCGUCgUCG--UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 130463 0.69 0.842954
Target:  5'- -gGCGGCcggcgGGCGGCcggcgGCGGCGAGGCggggggCGa -3'
miRNA:   3'- gaCGCCG-----UCGUCG-----UGCUGCUUUGa-----GC- -5'
21499 5' -54.8 NC_004812.1 + 130411 0.66 0.949272
Target:  5'- -gGCGGC-GCGcGCGCGcCGccGCUCGc -3'
miRNA:   3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 130259 0.68 0.88113
Target:  5'- -gGgGGCGGCGGCuCGGCGccgggccacGGCUCGc -3'
miRNA:   3'- gaCgCCGUCGUCGuGCUGCu--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 129858 0.66 0.940319
Target:  5'- -aGCGGCGGCu-CAUGGCGAcGGCggCGg -3'
miRNA:   3'- gaCGCCGUCGucGUGCUGCU-UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 129748 0.76 0.471691
Target:  5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 129667 0.69 0.834709
Target:  5'- -gGCGGC-GCuGCGCGGCGAuGACgcccgCGg -3'
miRNA:   3'- gaCGCCGuCGuCGUGCUGCU-UUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 129554 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 129441 0.8 0.271392
Target:  5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 129417 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 129272 0.76 0.471691
Target:  5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3'
miRNA:   3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 129218 0.81 0.240591
Target:  5'- -gGCGGCGGCGGCGcCGGCGGAGCg-- -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 129092 0.76 0.45299
Target:  5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 128940 0.69 0.826277
Target:  5'- -gGCGGCAcGCGGCGCcagccgccGCGggGgUCGg -3'
miRNA:   3'- gaCGCCGU-CGUCGUGc-------UGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 128903 0.68 0.858854
Target:  5'- -gGCGGCGGCggagGGCGcCGGCGuguGGCUgGg -3'
miRNA:   3'- gaCGCCGUCG----UCGU-GCUGCu--UUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 128737 0.76 0.471691
Target:  5'- -cGCGGCGGCcgaaGGCGCGGcCGGAgccggGCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCUU-----UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.