miRNA display CGI


Results 81 - 100 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 128705 0.71 0.743348
Target:  5'- ---aGGCGGCGGCGCGGCGcAGCg-- -3'
miRNA:   3'- gacgCCGUCGUCGUGCUGCuUUGagc -5'
21499 5' -54.8 NC_004812.1 + 128390 0.75 0.510211
Target:  5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3'
miRNA:   3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128318 0.71 0.703523
Target:  5'- -cGUGGCGGC-GCGCGACGGcgGGCccgUCGg -3'
miRNA:   3'- gaCGCCGUCGuCGUGCUGCU--UUG---AGC- -5'
21499 5' -54.8 NC_004812.1 + 128286 0.74 0.549982
Target:  5'- -cGCGGCgGGCAGCACGGCGcaGGGCa-- -3'
miRNA:   3'- gaCGCCG-UCGUCGUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 128222 0.67 0.894867
Target:  5'- -cGCGGCcggaGGcCAGCACGGCGcgGCg-- -3'
miRNA:   3'- gaCGCCG----UC-GUCGUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 128149 0.74 0.560081
Target:  5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3'
miRNA:   3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 128074 0.71 0.743348
Target:  5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 128043 0.78 0.35012
Target:  5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3'
miRNA:   3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 127995 0.7 0.762707
Target:  5'- -gGCGGCGGCGGCcucGCGgGCGGgcGAgUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG---UGC-UGCU--UUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 127785 0.69 0.817665
Target:  5'- -cGCGcGCAGCacgagcGGCGCGGCGucgggguccGGCUCGa -3'
miRNA:   3'- gaCGC-CGUCG------UCGUGCUGCu--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 127738 0.69 0.842954
Target:  5'- -cGCGGcCAGCGcacGCGCGGCGcgGCggCGg -3'
miRNA:   3'- gaCGCC-GUCGU---CGUGCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 127672 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 127519 0.7 0.790839
Target:  5'- -cGCGGgGcCGGCGuccuCGGCGAGGCUCGa -3'
miRNA:   3'- gaCGCCgUcGUCGU----GCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 124915 0.67 0.901388
Target:  5'- -gGCGGCGGCGGgGgCGGCGGcccauCUCc -3'
miRNA:   3'- gaCGCCGUCGUCgU-GCUGCUuu---GAGc -5'
21499 5' -54.8 NC_004812.1 + 124693 0.7 0.781594
Target:  5'- -aGCGGCcGCGGUcgcuCGugGAGugGCUCGa -3'
miRNA:   3'- gaCGCCGuCGUCGu---GCugCUU--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 123642 0.7 0.790839
Target:  5'- -cGCGGCGGCGGUccggACGGCGGuccGACg-- -3'
miRNA:   3'- gaCGCCGUCGUCG----UGCUGCU---UUGagc -5'
21499 5' -54.8 NC_004812.1 + 123564 0.74 0.570231
Target:  5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3'
miRNA:   3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 123128 0.71 0.733517
Target:  5'- -gGCGGCGGCGGCGucggaGGCGggG-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCGUg----CUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 122907 0.71 0.703523
Target:  5'- -cGCGGUAGCGGC-CGACGGccgcGACgcCGg -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUGCU----UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 122840 0.7 0.781594
Target:  5'- -gGCGGUgccGGCGcGCACGGCGuc-CUCGg -3'
miRNA:   3'- gaCGCCG---UCGU-CGUGCUGCuuuGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.