miRNA display CGI


Results 101 - 120 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 122821 0.66 0.940319
Target:  5'- -gGCGGC-GCAGCG-GGCG-AugUCGu -3'
miRNA:   3'- gaCGCCGuCGUCGUgCUGCuUugAGC- -5'
21499 5' -54.8 NC_004812.1 + 122628 0.66 0.944915
Target:  5'- -gGCGGCucGCAGUgguaGAagaGGAGCUCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGug--CUg--CUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 122360 0.68 0.873922
Target:  5'- -gGCGGgGGCcggggcgcggGGCGCGGCGGcccCUCGg -3'
miRNA:   3'- gaCGCCgUCG----------UCGUGCUGCUuu-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 121973 0.67 0.917807
Target:  5'- -aGCGGCgGGCcugggcugggccugAGCGCcgGGCGGGACUUGg -3'
miRNA:   3'- gaCGCCG-UCG--------------UCGUG--CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 121659 0.7 0.799938
Target:  5'- -aGCGGCcuGCGGCGgaGGCGGAGCggCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGUg-CUGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 121182 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 121157 0.67 0.894867
Target:  5'- -cGCGGCGcuGCAGCGCuGCGAGgGC-CGg -3'
miRNA:   3'- gaCGCCGU--CGUCGUGcUGCUU-UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 120863 0.68 0.88113
Target:  5'- cCUGCGGgGGCuGGCGCuguaGCGggGCggggCGg -3'
miRNA:   3'- -GACGCCgUCG-UCGUGc---UGCuuUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 119492 0.67 0.913718
Target:  5'- -cGCGGCGGCAgGgGCGGCGuccg-CGg -3'
miRNA:   3'- gaCGCCGUCGU-CgUGCUGCuuugaGC- -5'
21499 5' -54.8 NC_004812.1 + 119481 0.66 0.935484
Target:  5'- uCUGCGccGCGGCGGC-CGACGcGGGCg-- -3'
miRNA:   3'- -GACGC--CGUCGUCGuGCUGC-UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 119050 0.66 0.949272
Target:  5'- -cGUGGCGGgcugccacauCGGCACGGCG-GACUUu -3'
miRNA:   3'- gaCGCCGUC----------GUCGUGCUGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 117627 0.66 0.930406
Target:  5'- -gGCGGCgcgGGCcgccgGGCGCGGCGggG-UCGc -3'
miRNA:   3'- gaCGCCG---UCG-----UCGUGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 117388 0.71 0.74139
Target:  5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 117289 0.7 0.753081
Target:  5'- -gGCGGCGGCcuccGGUACGGcCGggGC-CGa -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 116472 0.71 0.71259
Target:  5'- -cGCGGCGGCGGauagcuucgcCGCGGCGGccaacuuuugccuGGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUC----------GUGCUGCU-------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 116331 0.72 0.642129
Target:  5'- cCUGCuGGCGGCGGCGC-AgGAGACcuUCGg -3'
miRNA:   3'- -GACG-CCGUCGUCGUGcUgCUUUG--AGC- -5'
21499 5' -54.8 NC_004812.1 + 115805 0.67 0.913718
Target:  5'- -aGCGGCAGCcGUugugaGGCGAGGCggcCGg -3'
miRNA:   3'- gaCGCCGUCGuCGug---CUGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 115790 0.66 0.944915
Target:  5'- -cGCcGguGCGGCACGAaGggGCgagCGa -3'
miRNA:   3'- gaCGcCguCGUCGUGCUgCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 115437 0.7 0.799035
Target:  5'- -cGCGGCgccgagagcgccuGGCGGCGCGcCGcuGGGCUCGc -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCuGC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 115435 0.71 0.703523
Target:  5'- -aGCGacguuGgGGCGGCGCGcCGggGCUCGa -3'
miRNA:   3'- gaCGC-----CgUCGUCGUGCuGCuuUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.