miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 128149 0.74 0.560081
Target:  5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3'
miRNA:   3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 123564 0.74 0.570231
Target:  5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3'
miRNA:   3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 29923 0.72 0.649342
Target:  5'- -cGCGGCccgcggguggagcgAGCAGCACGACG--GCgUCGa -3'
miRNA:   3'- gaCGCCG--------------UCGUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 64151 0.72 0.662718
Target:  5'- -cGgGGaCGGCGGCGCGGCG-GGCUCc -3'
miRNA:   3'- gaCgCC-GUCGUCGUGCUGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 129554 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 129417 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 44295 0.72 0.671954
Target:  5'- -cGCGGcCAGCcgcccgaGGCGCGACucGAGCUCGg -3'
miRNA:   3'- gaCGCC-GUCG-------UCGUGCUGc-UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 149006 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 127672 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 74062 0.71 0.703523
Target:  5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5'
21499 5' -54.8 NC_004812.1 + 46673 0.72 0.646252
Target:  5'- -gGgGGCAGCuccgcuccgauaugaGGCGCGACGgcGCUCu -3'
miRNA:   3'- gaCgCCGUCG---------------UCGUGCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 48299 0.72 0.642129
Target:  5'- -cGCGGCGGUGGC-CGAgGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUgCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 25637 0.74 0.580426
Target:  5'- -aGCGGaaCAGCAGCGCGcggGCGGccGGCUCGu -3'
miRNA:   3'- gaCGCC--GUCGUCGUGC---UGCU--UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 150580 0.74 0.580426
Target:  5'- -cGCGGCGGCgGGCuccuCGACGggGCggCGc -3'
miRNA:   3'- gaCGCCGUCG-UCGu---GCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 155424 0.74 0.584515
Target:  5'- -gGUGGCGGCGGCgacggcgacgGCGACGAGggagcggggggccggGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCG----------UGCUGCUU---------------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 95606 0.73 0.590658
Target:  5'- -cGCGGCAGCAGCaACGGCaccgggccGGGCUCc -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGc-------UUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 75822 0.73 0.600921
Target:  5'- -aGCGGCGGCAGCGCcggGugGugcugguCUCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUG---CugCuuu----GAGC- -5'
21499 5' -54.8 NC_004812.1 + 46588 0.73 0.610177
Target:  5'- -cGCGGCcggguagcacaggAGCGGCGCGACGGggUggCGa -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUGCUuuGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 39281 0.73 0.621509
Target:  5'- -gGCaGCAGCAGCGCcaggGGCGggGCUUu -3'
miRNA:   3'- gaCGcCGUCGUCGUG----CUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 53004 0.73 0.621509
Target:  5'- -gGCGGCuGUAGCACGuccCGggGCgcgCGg -3'
miRNA:   3'- gaCGCCGuCGUCGUGCu--GCuuUGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.