Results 81 - 100 of 396 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 5' | -54.8 | NC_004812.1 | + | 92928 | 0.71 | 0.713594 |
Target: 5'- -gGCGGaGGCgGGgGCGACGGAGCUCc -3' miRNA: 3'- gaCGCCgUCG-UCgUGCUGCUUUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 38371 | 0.71 | 0.713594 |
Target: 5'- cCUGCaGGCgGGCGGCGgGGCccgccgGGAGCUCGg -3' miRNA: 3'- -GACG-CCG-UCGUCGUgCUG------CUUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 155090 | 0.71 | 0.722599 |
Target: 5'- -gGCGGCGGCAugcccucGCGCGGCGgcGCgggcCGg -3' miRNA: 3'- gaCGCCGUCGU-------CGUGCUGCuuUGa---GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 98430 | 0.71 | 0.723596 |
Target: 5'- gUGCGGCGGCcGCGgGGCGGcaGGCgCGg -3' miRNA: 3'- gACGCCGUCGuCGUgCUGCU--UUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 82111 | 0.71 | 0.733517 |
Target: 5'- -gGCGGaCAGCAGCgccgACGACGGggUggCGg -3' miRNA: 3'- gaCGCC-GUCGUCG----UGCUGCUuuGa-GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 123128 | 0.71 | 0.733517 |
Target: 5'- -gGCGGCGGCGGCGucggaGGCGggG-UCGu -3' miRNA: 3'- gaCGCCGUCGUCGUg----CUGCuuUgAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 117388 | 0.71 | 0.74139 |
Target: 5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 74062 | 0.71 | 0.703523 |
Target: 5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3' miRNA: 3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 127672 | 0.72 | 0.682185 |
Target: 5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3' miRNA: 3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 149006 | 0.72 | 0.672979 |
Target: 5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3' miRNA: 3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 39281 | 0.73 | 0.621509 |
Target: 5'- -gGCaGCAGCAGCGCcaggGGCGggGCUUu -3' miRNA: 3'- gaCGcCGUCGUCGUG----CUGCuuUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 53004 | 0.73 | 0.621509 |
Target: 5'- -gGCGGCuGUAGCACGuccCGggGCgcgCGg -3' miRNA: 3'- gaCGCCGuCGUCGUGCu--GCuuUGa--GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 48299 | 0.72 | 0.642129 |
Target: 5'- -cGCGGCGGUGGC-CGAgGAGGC-CGa -3' miRNA: 3'- gaCGCCGUCGUCGuGCUgCUUUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 46673 | 0.72 | 0.646252 |
Target: 5'- -gGgGGCAGCuccgcuccgauaugaGGCGCGACGgcGCUCu -3' miRNA: 3'- gaCgCCGUCG---------------UCGUGCUGCuuUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 29923 | 0.72 | 0.649342 |
Target: 5'- -cGCGGCccgcggguggagcgAGCAGCACGACG--GCgUCGa -3' miRNA: 3'- gaCGCCG--------------UCGUCGUGCUGCuuUG-AGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 64151 | 0.72 | 0.662718 |
Target: 5'- -cGgGGaCGGCGGCGCGGCG-GGCUCc -3' miRNA: 3'- gaCgCC-GUCGUCGUGCUGCuUUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129554 | 0.72 | 0.662718 |
Target: 5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3' miRNA: 3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129417 | 0.72 | 0.662718 |
Target: 5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3' miRNA: 3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 44295 | 0.72 | 0.671954 |
Target: 5'- -cGCGGcCAGCcgcccgaGGCGCGACucGAGCUCGg -3' miRNA: 3'- gaCGCC-GUCG-------UCGUGCUGc-UUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128074 | 0.71 | 0.743348 |
Target: 5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3' miRNA: 3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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