miRNA display CGI


Results 101 - 120 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 94549 0.7 0.753081
Target:  5'- cCUGuCGGCGGCccuGGU--GGCGggGCUCGg -3'
miRNA:   3'- -GAC-GCCGUCG---UCGugCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 98712 0.7 0.753081
Target:  5'- -gGgGGCGGCGGCGCGGgGucguuCUCGc -3'
miRNA:   3'- gaCgCCGUCGUCGUGCUgCuuu--GAGC- -5'
21499 5' -54.8 NC_004812.1 + 117289 0.7 0.753081
Target:  5'- -gGCGGCGGCcuccGGUACGGcCGggGC-CGa -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 77043 0.7 0.753081
Target:  5'- -gGCGcGCAcGC-GCGCGGCGAGgcGCUCGc -3'
miRNA:   3'- gaCGC-CGU-CGuCGUGCUGCUU--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 127995 0.7 0.762707
Target:  5'- -gGCGGCGGCGGCcucGCGgGCGGgcGAgUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG---UGC-UGCU--UUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 98430 0.71 0.723596
Target:  5'- gUGCGGCGGCcGCGgGGCGGcaGGCgCGg -3'
miRNA:   3'- gACGCCGUCGuCGUgCUGCU--UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 155090 0.71 0.722599
Target:  5'- -gGCGGCGGCAugcccucGCGCGGCGgcGCgggcCGg -3'
miRNA:   3'- gaCGCCGUCGU-------CGUGCUGCuuUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 29923 0.72 0.649342
Target:  5'- -cGCGGCccgcggguggagcgAGCAGCACGACG--GCgUCGa -3'
miRNA:   3'- gaCGCCG--------------UCGUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 64151 0.72 0.662718
Target:  5'- -cGgGGaCGGCGGCGCGGCG-GGCUCc -3'
miRNA:   3'- gaCgCC-GUCGUCGUGCUGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 129554 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 129417 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 44295 0.72 0.671954
Target:  5'- -cGCGGcCAGCcgcccgaGGCGCGACucGAGCUCGg -3'
miRNA:   3'- gaCGCC-GUCG-------UCGUGCUGc-UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 149006 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 127672 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 74062 0.71 0.703523
Target:  5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5'
21499 5' -54.8 NC_004812.1 + 107420 0.71 0.703523
Target:  5'- gUGCGGCcaggcccaccGGCcGCGCGGCGGccgucgcgGACUCGc -3'
miRNA:   3'- gACGCCG----------UCGuCGUGCUGCU--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128318 0.71 0.703523
Target:  5'- -cGUGGCGGC-GCGCGACGGcgGGCccgUCGg -3'
miRNA:   3'- gaCGCCGUCGuCGUGCUGCU--UUG---AGC- -5'
21499 5' -54.8 NC_004812.1 + 91219 0.71 0.713594
Target:  5'- gUGUGGCAGC-GCACGAagagggccaGGAACUgGg -3'
miRNA:   3'- gACGCCGUCGuCGUGCUg--------CUUUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 92928 0.71 0.713594
Target:  5'- -gGCGGaGGCgGGgGCGACGGAGCUCc -3'
miRNA:   3'- gaCGCCgUCG-UCgUGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 38371 0.71 0.713594
Target:  5'- cCUGCaGGCgGGCGGCGgGGCccgccgGGAGCUCGg -3'
miRNA:   3'- -GACG-CCG-UCGUCGUgCUG------CUUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.