miRNA display CGI


Results 121 - 140 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 115437 0.7 0.799035
Target:  5'- -cGCGGCgccgagagcgccuGGCGGCGCGcCGcuGGGCUCGc -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCuGC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 72235 0.7 0.799938
Target:  5'- aCUGCGGCGGggcguccgguCGGCGgGcGCGAGACUgGa -3'
miRNA:   3'- -GACGCCGUC----------GUCGUgC-UGCUUUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 37678 0.71 0.747254
Target:  5'- -gGgGGCAGCAGCGCcgcgucccgcaucagGugGuuGAGCUCGg -3'
miRNA:   3'- gaCgCCGUCGUCGUG---------------CugC--UUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 155290 0.71 0.743348
Target:  5'- -aGgGGCGG-GGCGCGGCGggGCcCGg -3'
miRNA:   3'- gaCgCCGUCgUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 128705 0.71 0.743348
Target:  5'- ---aGGCGGCGGCGCGGCGcAGCg-- -3'
miRNA:   3'- gacgCCGUCGUCGUGCUGCuUUGagc -5'
21499 5' -54.8 NC_004812.1 + 127672 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 74062 0.71 0.703523
Target:  5'- -gGCGGCAGCggcgGGCGCGcGCGGGccgcCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGC-UGCUUu---GAGC- -5'
21499 5' -54.8 NC_004812.1 + 107420 0.71 0.703523
Target:  5'- gUGCGGCcaggcccaccGGCcGCGCGGCGGccgucgcgGACUCGc -3'
miRNA:   3'- gACGCCG----------UCGuCGUGCUGCU--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128318 0.71 0.703523
Target:  5'- -cGUGGCGGC-GCGCGACGGcgGGCccgUCGg -3'
miRNA:   3'- gaCGCCGUCGuCGUGCUGCU--UUG---AGC- -5'
21499 5' -54.8 NC_004812.1 + 91219 0.71 0.713594
Target:  5'- gUGUGGCAGC-GCACGAagagggccaGGAACUgGg -3'
miRNA:   3'- gACGCCGUCGuCGUGCUg--------CUUUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 92928 0.71 0.713594
Target:  5'- -gGCGGaGGCgGGgGCGACGGAGCUCc -3'
miRNA:   3'- gaCGCCgUCG-UCgUGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 38371 0.71 0.713594
Target:  5'- cCUGCaGGCgGGCGGCGgGGCccgccgGGAGCUCGg -3'
miRNA:   3'- -GACG-CCG-UCGUCGUgCUG------CUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 121659 0.7 0.799938
Target:  5'- -aGCGGCcuGCGGCGgaGGCGGAGCggCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGUg-CUGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 155090 0.71 0.722599
Target:  5'- -gGCGGCGGCAugcccucGCGCGGCGgcGCgggcCGg -3'
miRNA:   3'- gaCGCCGUCGU-------CGUGCUGCuuUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 98430 0.71 0.723596
Target:  5'- gUGCGGCGGCcGCGgGGCGGcaGGCgCGg -3'
miRNA:   3'- gACGCCGUCGuCGUgCUGCU--UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 82111 0.71 0.733517
Target:  5'- -gGCGGaCAGCAGCgccgACGACGGggUggCGg -3'
miRNA:   3'- gaCGCC-GUCGUCG----UGCUGCUuuGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 123128 0.71 0.733517
Target:  5'- -gGCGGCGGCGGCGucggaGGCGggG-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCGUg----CUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 117388 0.71 0.74139
Target:  5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128074 0.71 0.743348
Target:  5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 19703 0.71 0.743348
Target:  5'- -gGCGGCGcGCGGCGcCGGCGAccGGCcgUCGg -3'
miRNA:   3'- gaCGCCGU-CGUCGU-GCUGCU--UUG--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.