miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 54759 0.74 0.549982
Target:  5'- -gGgGGCGGUGGaCACGGCGgcGCUCGu -3'
miRNA:   3'- gaCgCCGUCGUC-GUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 2882 0.75 0.510211
Target:  5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3'
miRNA:   3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 130828 0.77 0.425716
Target:  5'- gCUGCGGCGGgGGCugACGACGGc-CUCGa -3'
miRNA:   3'- -GACGCCGUCgUCG--UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 144052 0.81 0.233075
Target:  5'- gUGCGGCGGCGGCACGccgccgggggccugGCGGAGCUg- -3'
miRNA:   3'- gACGCCGUCGUCGUGC--------------UGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 138526 0.73 0.621509
Target:  5'- gUGCGGCGGCccGgACGGCG--GCUCGg -3'
miRNA:   3'- gACGCCGUCGu-CgUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 57785 0.74 0.570231
Target:  5'- -cGUGGUucgaGGCGGCgcugGCGACGGAGCUCu -3'
miRNA:   3'- gaCGCCG----UCGUCG----UGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 53053 0.75 0.500451
Target:  5'- -cGCGGCAGCuGCACcgccaGGCGgcGCUCa -3'
miRNA:   3'- gaCGCCGUCGuCGUG-----CUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 101043 0.82 0.202427
Target:  5'- gCUGCGuGCgcgAGCAGCGCGGCG-AGCUCGa -3'
miRNA:   3'- -GACGC-CG---UCGUCGUGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 154465 0.74 0.570231
Target:  5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3'
miRNA:   3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 138039 0.84 0.169631
Target:  5'- gUGCGGCGGCGGCgGCGGCGGAGCg-- -3'
miRNA:   3'- gACGCCGUCGUCG-UGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 108248 0.75 0.500451
Target:  5'- -gGCGGCGGCGucCGCGGCGGAGCccUCGg -3'
miRNA:   3'- gaCGCCGUCGUc-GUGCUGCUUUG--AGC- -5'
21499 5' -54.8 NC_004812.1 + 79332 0.74 0.549982
Target:  5'- -aGCGGa--CGGUGCGGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCgucGUCGUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3764 0.76 0.471691
Target:  5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3'
miRNA:   3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 138289 0.77 0.425716
Target:  5'- cCUGCgGGCGGUGGuCGCGGCG-GGCUCGg -3'
miRNA:   3'- -GACG-CCGUCGUC-GUGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 2535 0.78 0.35012
Target:  5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3'
miRNA:   3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3710 0.81 0.240591
Target:  5'- -gGCGGCGGCGGCGcCGGCGGAGCg-- -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 67209 0.73 0.631819
Target:  5'- -cGCGGCGGCGGCGCccGCG-GGCUCc -3'
miRNA:   3'- gaCGCCGUCGUCGUGc-UGCuUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 98583 0.73 0.625632
Target:  5'- uCUGCGaGCAGCuGCGCGgcaucaucgccgaggGCGggGCgUCGg -3'
miRNA:   3'- -GACGC-CGUCGuCGUGC---------------UGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 107664 0.73 0.600921
Target:  5'- -gGCGGcCGGCAGCACGccgugGCGGAGCagCGu -3'
miRNA:   3'- gaCGCC-GUCGUCGUGC-----UGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 25071 0.74 0.580426
Target:  5'- -cGCGGCGGCgGGCuccuCGACGggGCggCGc -3'
miRNA:   3'- gaCGCCGUCG-UCGu---GCUGCuuUGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.