miRNA display CGI


Results 61 - 80 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 98583 0.73 0.625632
Target:  5'- uCUGCGaGCAGCuGCGCGgcaucaucgccgaggGCGggGCgUCGg -3'
miRNA:   3'- -GACGC-CGUCGuCGUGC---------------UGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 116331 0.72 0.642129
Target:  5'- cCUGCuGGCGGCGGCGC-AgGAGACcuUCGg -3'
miRNA:   3'- -GACG-CCGUCGUCGUGcUgCUUUG--AGC- -5'
21499 5' -54.8 NC_004812.1 + 12895 0.81 0.261204
Target:  5'- -aGCGGCgcucggugcccccggGGCGGCGCGGCGAGcGCUCGa -3'
miRNA:   3'- gaCGCCG---------------UCGUCGUGCUGCUU-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 80483 0.78 0.35012
Target:  5'- -cGCGGCGGCGcGC-CGACG-AGCUCGa -3'
miRNA:   3'- gaCGCCGUCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3584 0.76 0.45299
Target:  5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 107577 0.75 0.490775
Target:  5'- -gGCGGCGGCGGCGCGGuuGAcCUCGu -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUgcUUuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 91545 0.75 0.520048
Target:  5'- -gGCGGCGGCGGC-CGcCGAGACcgCGu -3'
miRNA:   3'- gaCGCCGUCGUCGuGCuGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 79332 0.74 0.549982
Target:  5'- -aGCGGa--CGGUGCGGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCgucGUCGUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 57785 0.74 0.570231
Target:  5'- -cGUGGUucgaGGCGGCgcugGCGACGGAGCUCu -3'
miRNA:   3'- gaCGCCG----UCGUCG----UGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 13279 0.73 0.590658
Target:  5'- -gGCGGCGGaggccuCGGCGCGGCGggGCguccgCGu -3'
miRNA:   3'- gaCGCCGUC------GUCGUGCUGCuuUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 38437 0.7 0.766524
Target:  5'- -gGCGGCgaugcgcggggacggGGgAGCGCGGgGAGACUCu -3'
miRNA:   3'- gaCGCCG---------------UCgUCGUGCUgCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 115169 0.7 0.762707
Target:  5'- aCUGCGGgGGCGGCA-GACGGAGu--- -3'
miRNA:   3'- -GACGCCgUCGUCGUgCUGCUUUgagc -5'
21499 5' -54.8 NC_004812.1 + 3909 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 90492 0.72 0.672979
Target:  5'- -cGCGGCGGCGGCGCcuGCGAcccccgccuGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGUGc-UGCUu--------UGAGc -5'
21499 5' -54.8 NC_004812.1 + 87127 0.72 0.693391
Target:  5'- uCUGgguuCGGCGGCGGCGCGccaggGCGu-GCUCGg -3'
miRNA:   3'- -GAC----GCCGUCGUCGUGC-----UGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 122907 0.71 0.703523
Target:  5'- -cGCGGUAGCGGC-CGACGGccgcGACgcCGg -3'
miRNA:   3'- gaCGCCGUCGUCGuGCUGCU----UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 87045 0.71 0.723596
Target:  5'- -gGCGGCuGCGGCGCGGcCGgcGCcgCGg -3'
miRNA:   3'- gaCGCCGuCGUCGUGCU-GCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 148289 0.71 0.74139
Target:  5'- -cGCGGCGGCGGCGcCGGCccgcugcugcGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGcuu-------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 81366 0.71 0.743348
Target:  5'- -cGCGccaaGCAGCAGCGCGcCGAGGC-Ca -3'
miRNA:   3'- gaCGC----CGUCGUCGUGCuGCUUUGaGc -5'
21499 5' -54.8 NC_004812.1 + 141588 0.7 0.753081
Target:  5'- -gGCGGCguugAGCAGCGCGcCGAAGaccgCGg -3'
miRNA:   3'- gaCGCCG----UCGUCGUGCuGCUUUga--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.