miRNA display CGI


Results 81 - 100 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 23498 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 19597 0.72 0.693391
Target:  5'- -gGgGGCuuGCAGcCGCGGCGAAucGCUCGc -3'
miRNA:   3'- gaCgCCGu-CGUC-GUGCUGCUU--UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 88304 0.71 0.703523
Target:  5'- uCUGCGGCgAGCuGCugGugGcGugUCa -3'
miRNA:   3'- -GACGCCG-UCGuCGugCugCuUugAGc -5'
21499 5' -54.8 NC_004812.1 + 116472 0.71 0.71259
Target:  5'- -cGCGGCGGCGGauagcuucgcCGCGGCGGccaacuuuugccuGGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUC----------GUGCUGCU-------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 135221 0.71 0.723596
Target:  5'- -cGCGGCgAGaCGGcCGCGgcGCGGAGCUCGc -3'
miRNA:   3'- gaCGCCG-UC-GUC-GUGC--UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 81366 0.71 0.743348
Target:  5'- -cGCGccaaGCAGCAGCGCGcCGAGGC-Ca -3'
miRNA:   3'- gaCGC----CGUCGUCGUGCuGCUUUGaGc -5'
21499 5' -54.8 NC_004812.1 + 141588 0.7 0.753081
Target:  5'- -gGCGGCguugAGCAGCGCGcCGAAGaccgCGg -3'
miRNA:   3'- gaCGCCG----UCGUCGUGCuGCUUUga--GC- -5'
21499 5' -54.8 NC_004812.1 + 13279 0.73 0.590658
Target:  5'- -gGCGGCGGaggccuCGGCGCGGCGggGCguccgCGu -3'
miRNA:   3'- gaCGCCGUC------GUCGUGCUGCuuUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 57785 0.74 0.570231
Target:  5'- -cGUGGUucgaGGCGGCgcugGCGACGGAGCUCu -3'
miRNA:   3'- gaCGCCG----UCGUCG----UGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 79332 0.74 0.549982
Target:  5'- -aGCGGa--CGGUGCGGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCgucGUCGUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 100763 0.7 0.775982
Target:  5'- gCUGCGGCgccucgucaaccccgAGCAGaGCGACGAGAggCGc -3'
miRNA:   3'- -GACGCCG---------------UCGUCgUGCUGCUUUgaGC- -5'
21499 5' -54.8 NC_004812.1 + 86994 0.7 0.789921
Target:  5'- -aGCGGCGGgGGCACGcaccaccacccGCGGGccaccgccgucgcGCUCGg -3'
miRNA:   3'- gaCGCCGUCgUCGUGC-----------UGCUU-------------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 154543 0.7 0.790839
Target:  5'- -cGCGGCGGCGGUccggACGGCGGuccGACg-- -3'
miRNA:   3'- gaCGCCGUCGUCG----UGCUGCU---UUGagc -5'
21499 5' -54.8 NC_004812.1 + 39275 0.7 0.799938
Target:  5'- -gGCGGCcgccggGGCccgggguccgggGGCGCGGCGggGgCUCGg -3'
miRNA:   3'- gaCGCCG------UCG------------UCGUGCUGCuuU-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 5502 0.69 0.808883
Target:  5'- -gGCGGCGGCGGCcGCGGgGAAGg-CGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUgCUUUgaGC- -5'
21499 5' -54.8 NC_004812.1 + 12895 0.81 0.261204
Target:  5'- -aGCGGCgcucggugcccccggGGCGGCGCGGCGAGcGCUCGa -3'
miRNA:   3'- gaCGCCG---------------UCGUCGUGCUGCUU-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 80483 0.78 0.35012
Target:  5'- -cGCGGCGGCGcGC-CGACG-AGCUCGa -3'
miRNA:   3'- gaCGCCGUCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3584 0.76 0.45299
Target:  5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 107577 0.75 0.490775
Target:  5'- -gGCGGCGGCGGCGCGGuuGAcCUCGu -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUgcUUuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 91545 0.75 0.520048
Target:  5'- -gGCGGCGGCGGC-CGcCGAGACcgCGu -3'
miRNA:   3'- gaCGCCGUCGUCGuGCuGCUUUGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.