miRNA display CGI


Results 101 - 120 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 152560 0.7 0.799938
Target:  5'- -aGCGGCcuGCGGCGgaGGCGGAGCggCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGUg-CUGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 99655 0.69 0.808883
Target:  5'- -cGCGGCAagcucGCGGCGC--UGAAGCUCa -3'
miRNA:   3'- gaCGCCGU-----CGUCGUGcuGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 2277 0.69 0.817665
Target:  5'- -cGCGcGCAGCacgagcGGCGCGGCGucgggguccGGCUCGa -3'
miRNA:   3'- gaCGC-CGUCG------UCGUGCUGCu--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 46692 0.69 0.826277
Target:  5'- -aGUGGCc-CAGCGCGACGugcagccGCUCGa -3'
miRNA:   3'- gaCGCCGucGUCGUGCUGCuu-----UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 146613 0.69 0.826277
Target:  5'- -gGCGGCAGCAccuccuccacGCgacaGCGGCGuucguACUCGg -3'
miRNA:   3'- gaCGCCGUCGU----------CG----UGCUGCuu---UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 116472 0.71 0.71259
Target:  5'- -cGCGGCGGCGGauagcuucgcCGCGGCGGccaacuuuugccuGGCUCGc -3'
miRNA:   3'- gaCGCCGUCGUC----------GUGCUGCU-------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 88304 0.71 0.703523
Target:  5'- uCUGCGGCgAGCuGCugGugGcGugUCa -3'
miRNA:   3'- -GACGCCG-UCGuCGugCugCuUugAGc -5'
21499 5' -54.8 NC_004812.1 + 12895 0.81 0.261204
Target:  5'- -aGCGGCgcucggugcccccggGGCGGCGCGGCGAGcGCUCGa -3'
miRNA:   3'- gaCGCCG---------------UCGUCGUGCUGCUU-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 80483 0.78 0.35012
Target:  5'- -cGCGGCGGCGcGC-CGACG-AGCUCGa -3'
miRNA:   3'- gaCGCCGUCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3584 0.76 0.45299
Target:  5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 107577 0.75 0.490775
Target:  5'- -gGCGGCGGCGGCGCGGuuGAcCUCGu -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUgcUUuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 91545 0.75 0.520048
Target:  5'- -gGCGGCGGCGGC-CGcCGAGACcgCGu -3'
miRNA:   3'- gaCGCCGUCGUCGuGCuGCUUUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 79332 0.74 0.549982
Target:  5'- -aGCGGa--CGGUGCGGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCgucGUCGUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 57785 0.74 0.570231
Target:  5'- -cGUGGUucgaGGCGGCgcugGCGACGGAGCUCu -3'
miRNA:   3'- gaCGCCG----UCGUCG----UGCUGCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 13279 0.73 0.590658
Target:  5'- -gGCGGCGGaggccuCGGCGCGGCGggGCguccgCGu -3'
miRNA:   3'- gaCGCCGUC------GUCGUGCUGCuuUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 55343 0.73 0.631819
Target:  5'- gCUGCGGCGGCAGUucgcccgccUGACGgcGCUgCGg -3'
miRNA:   3'- -GACGCCGUCGUCGu--------GCUGCuuUGA-GC- -5'
21499 5' -54.8 NC_004812.1 + 15204 0.72 0.642129
Target:  5'- gCUGCGGCAGgcgcgcucCAGCACGGCGuaguACaCGg -3'
miRNA:   3'- -GACGCCGUC--------GUCGUGCUGCuu--UGaGC- -5'
21499 5' -54.8 NC_004812.1 + 80274 0.72 0.662718
Target:  5'- -gGCGGUGGCGGUGCGGCGGGAg--- -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCUUUgagc -5'
21499 5' -54.8 NC_004812.1 + 23498 0.72 0.672979
Target:  5'- gUGCGGCgGGCcgGGCGCGGCGgcGC-CGg -3'
miRNA:   3'- gACGCCG-UCG--UCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 19597 0.72 0.693391
Target:  5'- -gGgGGCuuGCAGcCGCGGCGAAucGCUCGc -3'
miRNA:   3'- gaCgCCGu-CGUC-GUGCUGCUU--UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.