miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 136704 0.66 0.944915
Target:  5'- -gGUGGCGGCGGCGCGG-GccGC-CGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUgCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 79052 0.66 0.944915
Target:  5'- -cGCGGCccAGCGGC-CGgacGCGuuuGCUCGu -3'
miRNA:   3'- gaCGCCG--UCGUCGuGC---UGCuu-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 54081 0.66 0.944915
Target:  5'- -aGCGGUAGCGcGCACccgauACGcAAACUCc -3'
miRNA:   3'- gaCGCCGUCGU-CGUGc----UGC-UUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 33762 0.66 0.944466
Target:  5'- cCUGCGGgcccucacgggcuCGGCGGC-CGACGAca-UCGc -3'
miRNA:   3'- -GACGCC-------------GUCGUCGuGCUGCUuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 47602 0.66 0.944466
Target:  5'- -cGCGGCgaccccgAGCGcGC-CGACG-GGCUCGg -3'
miRNA:   3'- gaCGCCG-------UCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 4350 0.66 0.940319
Target:  5'- -aGCGGCGGCu-CAUGGCGAcGGCggCGg -3'
miRNA:   3'- gaCGCCGUCGucGUGCUGCU-UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 88105 0.66 0.940319
Target:  5'- -cGCGaCAGCAGCACGcaguCGggGaUCGc -3'
miRNA:   3'- gaCGCcGUCGUCGUGCu---GCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 122821 0.66 0.940319
Target:  5'- -gGCGGC-GCAGCG-GGCG-AugUCGu -3'
miRNA:   3'- gaCGCCGuCGUCGUgCUGCuUugAGC- -5'
21499 5' -54.8 NC_004812.1 + 25019 0.66 0.940319
Target:  5'- -gGUGGCGGgGGUugG-CGAAgauggGCUCGc -3'
miRNA:   3'- gaCGCCGUCgUCGugCuGCUU-----UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 43842 0.66 0.940319
Target:  5'- -cGCGGCucGCGGCGcCGACGuccgGGCgCGg -3'
miRNA:   3'- gaCGCCGu-CGUCGU-GCUGCu---UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 67775 0.66 0.940319
Target:  5'- -gGCGGCGGCccggGGCGCgGGCGGc-UUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUG-CUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 141762 0.66 0.940319
Target:  5'- -gGCGGCcGCGGgGCGGCGucGAACg-- -3'
miRNA:   3'- gaCGCCGuCGUCgUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 115237 0.66 0.940319
Target:  5'- uUGgGGguGguGCACcaACGAGGcCUCGg -3'
miRNA:   3'- gACgCCguCguCGUGc-UGCUUU-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 129858 0.66 0.940319
Target:  5'- -aGCGGCGGCu-CAUGGCGAcGGCggCGg -3'
miRNA:   3'- gaCGCCGUCGucGUGCUGCU-UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 18435 0.66 0.939847
Target:  5'- -cGCGGCgggggccgcguccGGUGGCGCGGCGGgggGGCgCGg -3'
miRNA:   3'- gaCGCCG-------------UCGUCGUGCUGCU---UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 64185 0.66 0.937447
Target:  5'- -gGCGGCGGgggcCGGCACGugGGauAccagggcgccaagguGCUCGa -3'
miRNA:   3'- gaCGCCGUC----GUCGUGCugCU--U---------------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 85709 0.66 0.935978
Target:  5'- cCUGCGGgGGCGGCccacuggccgcacguGCGccuacgcggccuucGCGGAGCUgGg -3'
miRNA:   3'- -GACGCCgUCGUCG---------------UGC--------------UGCUUUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 121182 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 56809 0.66 0.935484
Target:  5'- -cGCGGCgcagcuGGCGGCGCGcCGccacAACUCc -3'
miRNA:   3'- gaCGCCG------UCGUCGUGCuGCu---UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 110472 0.66 0.935484
Target:  5'- cCUGCGGCuGCcGUACuucGCGAAGgUCa -3'
miRNA:   3'- -GACGCCGuCGuCGUGc--UGCUUUgAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.