miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
215 3' -49.5 AC_000008.1 + 35473 1.14 0.001325
Target:  5'- aCUUUGACCCGGAACGCGGAAAACACCu -3'
miRNA:   3'- -GAAACUGGGCCUUGCGCCUUUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 12323 0.72 0.591861
Target:  5'- ---gGACCCGGcggUGCGGGcgGCGCUg -3'
miRNA:   3'- gaaaCUGGGCCuu-GCGCCUuuUGUGG- -5'
215 3' -49.5 AC_000008.1 + 24697 0.72 0.591861
Target:  5'- ---gGGCCCGGcgcCGCGGggGuucguaauCACCa -3'
miRNA:   3'- gaaaCUGGGCCuu-GCGCCuuUu-------GUGG- -5'
215 3' -49.5 AC_000008.1 + 8623 0.71 0.638554
Target:  5'- -gUUGACCCGGGauaucAUGUGGGGucccGCGCUc -3'
miRNA:   3'- gaAACUGGGCCU-----UGCGCCUUu---UGUGG- -5'
215 3' -49.5 AC_000008.1 + 3930 0.71 0.643229
Target:  5'- uCUUUGACCCGGGAacuuaauguCGUuucucagcagcuguuGGAucuGCGCCa -3'
miRNA:   3'- -GAAACUGGGCCUU---------GCG---------------CCUuu-UGUGG- -5'
215 3' -49.5 AC_000008.1 + 25087 0.71 0.685134
Target:  5'- --cUGACCCGGAgaugcaGCGCaagcuagaGGAAAcauugcacuACACCu -3'
miRNA:   3'- gaaACUGGGCCU------UGCG--------CCUUU---------UGUGG- -5'
215 3' -49.5 AC_000008.1 + 16118 0.71 0.685134
Target:  5'- ---aGACCgUGGuGCGCGGAGcccGGCGCUa -3'
miRNA:   3'- gaaaCUGG-GCCuUGCGCCUU---UUGUGG- -5'
215 3' -49.5 AC_000008.1 + 2278 0.7 0.708132
Target:  5'- uUUUGGCCagcugguuuaGGAugGUGGuggauGGCGCCa -3'
miRNA:   3'- gAAACUGGg---------CCUugCGCCuu---UUGUGG- -5'
215 3' -49.5 AC_000008.1 + 26979 0.7 0.741965
Target:  5'- ---cGAgCCGG-ACGCGGAGAucuCCa -3'
miRNA:   3'- gaaaCUgGGCCuUGCGCCUUUuguGG- -5'
215 3' -49.5 AC_000008.1 + 21968 0.69 0.794633
Target:  5'- cCUUUGACgaCGGGugggcggGCGCGGGccuGGCACg -3'
miRNA:   3'- -GAAACUGg-GCCU-------UGCGCCUu--UUGUGg -5'
215 3' -49.5 AC_000008.1 + 11236 0.69 0.795665
Target:  5'- ---gGGCCUGG--CGCGGcuaGGAGCGCCc -3'
miRNA:   3'- gaaaCUGGGCCuuGCGCC---UUUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 13165 0.68 0.81589
Target:  5'- ---gGACCUGG-ACGCGGAucuGAUcuCCg -3'
miRNA:   3'- gaaaCUGGGCCuUGCGCCUu--UUGu-GG- -5'
215 3' -49.5 AC_000008.1 + 9511 0.68 0.81589
Target:  5'- ---cGGCCguucucgcgGGGGCGCaguuGGAAGACGCCg -3'
miRNA:   3'- gaaaCUGGg--------CCUUGCG----CCUUUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 18891 0.68 0.825682
Target:  5'- gCUUUaGGCCgcgcuuuucuuCGGAcggugcaaGCGCGGgcAGCACCu -3'
miRNA:   3'- -GAAA-CUGG-----------GCCU--------UGCGCCuuUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 68 0.68 0.835244
Target:  5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3'
miRNA:   3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5'
215 3' -49.5 AC_000008.1 + 68 0.68 0.835244
Target:  5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3'
miRNA:   3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5'
215 3' -49.5 AC_000008.1 + 15045 0.68 0.844565
Target:  5'- ---aGGCCCaGc-CGCGGAAAGcCGCCc -3'
miRNA:   3'- gaaaCUGGGcCuuGCGCCUUUU-GUGG- -5'
215 3' -49.5 AC_000008.1 + 362 0.68 0.844565
Target:  5'- aCUUUGACCguuuACGUGGAGAcuCGCCc -3'
miRNA:   3'- -GAAACUGGgccuUGCGCCUUUu-GUGG- -5'
215 3' -49.5 AC_000008.1 + 29908 0.67 0.853634
Target:  5'- ----cACCCGGucACGUGGccuACACCu -3'
miRNA:   3'- gaaacUGGGCCu-UGCGCCuuuUGUGG- -5'
215 3' -49.5 AC_000008.1 + 12184 0.67 0.853634
Target:  5'- ---gGACCUGGGcugGCGGu-GGCACCc -3'
miRNA:   3'- gaaaCUGGGCCUug-CGCCuuUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.