miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 26900 0.66 0.726211
Target:  5'- aCGcCGCCGCGg-UCCCCgCCg-UUCCc -3'
miRNA:   3'- -GC-GCGGCGCaaAGGGGgGGagAAGGa -5'
21501 3' -60.6 NC_004812.1 + 152417 0.66 0.726211
Target:  5'- gGCGCCGCGggggCgCCCUCggcgUCCa -3'
miRNA:   3'- gCGCGGCGCaaa-GgGGGGGaga-AGGa -5'
21501 3' -60.6 NC_004812.1 + 34989 0.66 0.726211
Target:  5'- cCGCGCCGCc--UCCgCCCCCUg-UCg- -3'
miRNA:   3'- -GCGCGGCGcaaAGG-GGGGGAgaAGga -5'
21501 3' -60.6 NC_004812.1 + 67218 0.66 0.726211
Target:  5'- gGCGcCCGCGggcUCCCuCCUCUCgagggagCCg -3'
miRNA:   3'- gCGC-GGCGCaa-AGGG-GGGGAGaa-----GGa -5'
21501 3' -60.6 NC_004812.1 + 121516 0.66 0.726211
Target:  5'- gGCGCCGCGggggCgCCCUCggcgUCCa -3'
miRNA:   3'- gCGCGGCGCaaa-GgGGGGGaga-AGGa -5'
21501 3' -60.6 NC_004812.1 + 63076 0.66 0.726211
Target:  5'- aCGcCGCCGCacccgcgCCCCgCCUCggCCUu -3'
miRNA:   3'- -GC-GCGGCGcaaa---GGGGgGGAGaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 61253 0.66 0.726211
Target:  5'- cCGCGUCGCcgauGUcUCuCCCUCCUCgucggaUCCUg -3'
miRNA:   3'- -GCGCGGCG----CAaAG-GGGGGGAGa-----AGGA- -5'
21501 3' -60.6 NC_004812.1 + 4088 0.66 0.726211
Target:  5'- cCGCGCCGCc--UCCgCCCCCUg-UCg- -3'
miRNA:   3'- -GCGCGGCGcaaAGG-GGGGGAgaAGga -5'
21501 3' -60.6 NC_004812.1 + 152408 0.66 0.726211
Target:  5'- aCGcCGCCGCGg-UCCCCgCCg-UUCCc -3'
miRNA:   3'- -GC-GCGGCGCaaAGGGGgGGagAAGGa -5'
21501 3' -60.6 NC_004812.1 + 63673 0.66 0.722398
Target:  5'- aGCGgCGCGgagcuccgucgCCCCCgCCUCcgCCUc -3'
miRNA:   3'- gCGCgGCGCaaa--------GGGGG-GGAGaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 54212 0.66 0.720486
Target:  5'- cCGC-CCGCGggcgcuuccgucgUgCCCCCCUCcggcgUCCUa -3'
miRNA:   3'- -GCGcGGCGCaa-----------AgGGGGGGAGa----AGGA- -5'
21501 3' -60.6 NC_004812.1 + 20904 0.66 0.716656
Target:  5'- cCGUGCCGUGga--CCCCCUUCc-CCa -3'
miRNA:   3'- -GCGCGGCGCaaagGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 152910 0.66 0.716656
Target:  5'- gGCGCCGCcgccgCCgaCCUgCUCUUCCa -3'
miRNA:   3'- gCGCGGCGcaaa-GG--GGGgGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 27402 0.66 0.716656
Target:  5'- gGCGCCGCcgccgCCgaCCUgCUCUUCCa -3'
miRNA:   3'- gCGCGGCGcaaa-GG--GGGgGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 34381 0.66 0.707034
Target:  5'- cCGCGCCGCccacacccucccGUcUCgCgCCCCUUCUUUCg -3'
miRNA:   3'- -GCGCGGCG------------CAaAG-G-GGGGGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 50389 0.66 0.707034
Target:  5'- uCGaCGCCGCcg-UCgCCCCCUUCcgCCa -3'
miRNA:   3'- -GC-GCGGCGcaaAG-GGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 84661 0.66 0.707034
Target:  5'- gCGCGUCGCGgcagggCCgCCCCgcgCcgUCCUc -3'
miRNA:   3'- -GCGCGGCGCaaa---GGgGGGGa--Ga-AGGA- -5'
21501 3' -60.6 NC_004812.1 + 132111 0.66 0.707034
Target:  5'- cCGCGgCGCGggggCCCCCCg--UCCa -3'
miRNA:   3'- -GCGCgGCGCaaagGGGGGGagaAGGa -5'
21501 3' -60.6 NC_004812.1 + 84786 0.66 0.707034
Target:  5'- gGcCGCCGCa---CCCUCCCcCUUCCg -3'
miRNA:   3'- gC-GCGGCGcaaaGGGGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 104497 0.66 0.707034
Target:  5'- gCGCcaaGCCGCGguacUCCCCCCUCggCg- -3'
miRNA:   3'- -GCG---CGGCGCaaa-GGGGGGGAGaaGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.