miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 56594 0.66 0.983401
Target:  5'- gAUGGCgCCGCGCGGgggggugAugAGGugGCAg- -3'
miRNA:   3'- -UAUCG-GGCGCGCC-------UugUUUugUGUgu -5'
21501 5' -52.1 NC_004812.1 + 107858 0.66 0.981557
Target:  5'- -gGGCuCCGCcuccgaggGCGGAGCcgccACGCGCAc -3'
miRNA:   3'- uaUCG-GGCG--------CGCCUUGuuu-UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 136070 0.66 0.981557
Target:  5'- -cGGCCaCGCGCcgcaGGucgGCcGAGCGCACGa -3'
miRNA:   3'- uaUCGG-GCGCG----CCu--UGuUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 26424 0.66 0.981557
Target:  5'- -gGGCgCGC-CGGAgguggACGAGGCGCGCc -3'
miRNA:   3'- uaUCGgGCGcGCCU-----UGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 96471 0.66 0.981557
Target:  5'- cUGGCCCcuccuggaGGGGCAGGACACGCc -3'
miRNA:   3'- uAUCGGGcgcg----CCUUGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 74314 0.66 0.981557
Target:  5'- -gGGCuCCGCGCGcGGGCcucGAGCGCcCGa -3'
miRNA:   3'- uaUCG-GGCGCGC-CUUGu--UUUGUGuGU- -5'
21501 5' -52.1 NC_004812.1 + 153638 0.66 0.981557
Target:  5'- -cGGCCCaugcgggcggGCG-GGGAgAGGGCGCGCAc -3'
miRNA:   3'- uaUCGGG----------CGCgCCUUgUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 43386 0.66 0.981557
Target:  5'- -cGGCCgCGCGCuccgagauGGAccGCAGcgcGGCGCGCAc -3'
miRNA:   3'- uaUCGG-GCGCG--------CCU--UGUU---UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 139007 0.66 0.981557
Target:  5'- -aGGCCgGCGCGGAAguccuccGACGCcCAg -3'
miRNA:   3'- uaUCGGgCGCGCCUUguu----UUGUGuGU- -5'
21501 5' -52.1 NC_004812.1 + 108406 0.66 0.981557
Target:  5'- --cGCUCGCGcCGGcGCAcGugGCGCGg -3'
miRNA:   3'- uauCGGGCGC-GCCuUGUuUugUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 151932 0.66 0.981557
Target:  5'- -gGGCgCGC-CGGAgguggACGAGGCGCGCc -3'
miRNA:   3'- uaUCGgGCGcGCCU-----UGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 101201 0.66 0.981557
Target:  5'- --cGCgCCGCGcCGGGGguGuucGACGCACAu -3'
miRNA:   3'- uauCG-GGCGC-GCCUUguU---UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 130482 0.66 0.981557
Target:  5'- -gAGCCCGgGUGGucgGCGgucgcgaucccGGACGCGCu -3'
miRNA:   3'- uaUCGGGCgCGCCu--UGU-----------UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 27786 0.66 0.981557
Target:  5'- -cAGCCCGC-CGGGGgAGAGgGCGgGg -3'
miRNA:   3'- uaUCGGGCGcGCCUUgUUUUgUGUgU- -5'
21501 5' -52.1 NC_004812.1 + 102462 0.66 0.981344
Target:  5'- -cGGCaaaguaCGUGCGGAACAacauggaGAGCACGg- -3'
miRNA:   3'- uaUCGg-----GCGCGCCUUGU-------UUUGUGUgu -5'
21501 5' -52.1 NC_004812.1 + 45668 0.66 0.981344
Target:  5'- -cAGCCCGUGCuGGAAgccccccCGGGACgGCACc -3'
miRNA:   3'- uaUCGGGCGCG-CCUU-------GUUUUG-UGUGu -5'
21501 5' -52.1 NC_004812.1 + 94214 0.66 0.98091
Target:  5'- aGUAGaCCCGCGgGGcgcgcuucaGGCGAccgucgugcacgccGACGCGCAu -3'
miRNA:   3'- -UAUC-GGGCGCgCC---------UUGUU--------------UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 71941 0.66 0.979334
Target:  5'- -aGGaCgGCGCGGGGCGGcccugccgcGACGCGCGc -3'
miRNA:   3'- uaUCgGgCGCGCCUUGUU---------UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 100904 0.66 0.979334
Target:  5'- --cGCCgaGCGCGGGuGC-AGGCGCGCGc -3'
miRNA:   3'- uauCGGg-CGCGCCU-UGuUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 39394 0.66 0.979334
Target:  5'- aAUGGCCCGCagcugGCGGuGCGugccGACGCGg- -3'
miRNA:   3'- -UAUCGGGCG-----CGCCuUGUu---UUGUGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.