miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 3' -62.4 NC_004812.1 + 80504 0.66 0.65985
Target:  5'- uCGAGGccgccGCCGCGGaCCUGGCggagaagcuCGCGGAc -3'
miRNA:   3'- uGCUCC-----UGGCGCCaGGGCUG---------GCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 44256 0.66 0.65985
Target:  5'- cGCGAGGGCCGauagccgcUGGUCgcgcgCGACCGCc-- -3'
miRNA:   3'- -UGCUCCUGGC--------GCCAGg----GCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 137504 0.66 0.65985
Target:  5'- gGCGGGGGCCuggcccGCGGccggagCCCGAgCGCu-- -3'
miRNA:   3'- -UGCUCCUGG------CGCCa-----GGGCUgGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 60619 0.66 0.65985
Target:  5'- cCGGcGGACCGC-GUCCCcGCCGaCGGu -3'
miRNA:   3'- uGCU-CCUGGCGcCAGGGcUGGC-GCUu -5'
21502 3' -62.4 NC_004812.1 + 77332 0.66 0.657903
Target:  5'- gACGAGGACggggccauggaaGUGGUcucCCCGcuGCCGCGGc -3'
miRNA:   3'- -UGCUCCUGg-----------CGCCA---GGGC--UGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 58423 0.66 0.65011
Target:  5'- -gGGGGGCgGCGGgaCCCGgccaggaucGCCGUGAGg -3'
miRNA:   3'- ugCUCCUGgCGCCa-GGGC---------UGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 105132 0.66 0.65011
Target:  5'- cGCGcAGGGCUGCGGUCCgGGaa-CGAGg -3'
miRNA:   3'- -UGC-UCCUGGCGCCAGGgCUggcGCUU- -5'
21502 3' -62.4 NC_004812.1 + 154508 0.66 0.65011
Target:  5'- gACuGGGAgCGCGGcCCgGGCCGCc-- -3'
miRNA:   3'- -UGcUCCUgGCGCCaGGgCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 112014 0.66 0.65011
Target:  5'- gGCGGGGAuCUGCGGUCgCuGCUGCu-- -3'
miRNA:   3'- -UGCUCCU-GGCGCCAGgGcUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 73611 0.66 0.65011
Target:  5'- -aGAGGAUCGCcccGGcgCCCGucucccacGCCGCGGGg -3'
miRNA:   3'- ugCUCCUGGCG---CCa-GGGC--------UGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 80351 0.66 0.65011
Target:  5'- uCGAGGcggcGCgCGCGGgCCUGGCCGCc-- -3'
miRNA:   3'- uGCUCC----UG-GCGCCaGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 11058 0.66 0.65011
Target:  5'- uUGGGGGCCG-GGUCCguGCCGgGGAg -3'
miRNA:   3'- uGCUCCUGGCgCCAGGgcUGGCgCUU- -5'
21502 3' -62.4 NC_004812.1 + 101993 0.66 0.65011
Target:  5'- cGCGGGGGgucgcgcgacUCGCGG-CgCCG-CCGCGAGg -3'
miRNA:   3'- -UGCUCCU----------GGCGCCaG-GGCuGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 89120 0.66 0.65011
Target:  5'- gACGAcGGcCCGCGGgcgCCaGcCCGCGGAc -3'
miRNA:   3'- -UGCU-CCuGGCGCCa--GGgCuGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 28999 0.66 0.65011
Target:  5'- gACuGGGAgCGCGGcCCgGGCCGCc-- -3'
miRNA:   3'- -UGcUCCUgGCGCCaGGgCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 42025 0.66 0.649135
Target:  5'- gGCGGGGGCgCGCGGcgCCaagcgcaCGACCgucaGCGAGu -3'
miRNA:   3'- -UGCUCCUG-GCGCCa-GG-------GCUGG----CGCUU- -5'
21502 3' -62.4 NC_004812.1 + 113032 0.66 0.647185
Target:  5'- gGCGGGcgcgccggacggacGGCCGCGG-CCggcguCGGCCGCGGc -3'
miRNA:   3'- -UGCUC--------------CUGGCGCCaGG-----GCUGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 13442 0.66 0.644259
Target:  5'- uCGGGGgacGCCGUGGUCUCGGgggugggggguggcgUCGCGGGg -3'
miRNA:   3'- uGCUCC---UGGCGCCAGGGCU---------------GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 39164 0.66 0.640357
Target:  5'- cCGGGGgcGCCGgGGg-CCGGCCGaCGAAu -3'
miRNA:   3'- uGCUCC--UGGCgCCagGGCUGGC-GCUU- -5'
21502 3' -62.4 NC_004812.1 + 20602 0.66 0.640357
Target:  5'- gGCGAGGACgCGCGccUgCGACUGCGu- -3'
miRNA:   3'- -UGCUCCUG-GCGCcaGgGCUGGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.