miRNA display CGI


Results 21 - 40 of 318 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 5' -54.8 NC_004812.1 + 19115 0.66 0.959103
Target:  5'- aGUGCGcCGGGGuuGAccaGGAGCCCCgCGc -3'
miRNA:   3'- gCAUGU-GCCUUucCU---UCUCGGGG-GCc -5'
21502 5' -54.8 NC_004812.1 + 38563 0.66 0.959103
Target:  5'- gGUGC-CGcGggGGGAAGAuccgcggguccGCCuggCCCGGc -3'
miRNA:   3'- gCAUGuGC-CuuUCCUUCU-----------CGG---GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 3966 0.66 0.959103
Target:  5'- cCGgGCACGGcggccAGGucgccgccGAGCCCUCGGc -3'
miRNA:   3'- -GCaUGUGCCuu---UCCuu------CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 20125 0.66 0.955385
Target:  5'- --cGCGCGGggGagcGGAccGGGCCCcggCCGGg -3'
miRNA:   3'- gcaUGUGCCuuU---CCUu-CUCGGG---GGCC- -5'
21502 5' -54.8 NC_004812.1 + 71043 0.66 0.955385
Target:  5'- --cGCugGGGAGGGcGGccGCCCCUGcGg -3'
miRNA:   3'- gcaUGugCCUUUCCuUCu-CGGGGGC-C- -5'
21502 5' -54.8 NC_004812.1 + 36887 0.66 0.955385
Target:  5'- aGUACGCGGGGuGGuAG-GCgCCgGGg -3'
miRNA:   3'- gCAUGUGCCUUuCCuUCuCGgGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 37362 0.66 0.955385
Target:  5'- aCGacCGCGGGcccGGGGAGcGGGCCCUgCGGg -3'
miRNA:   3'- -GCauGUGCCU---UUCCUU-CUCGGGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 36317 0.66 0.955385
Target:  5'- --gACGCGGc-GGGccGGGGGCCCCCc- -3'
miRNA:   3'- gcaUGUGCCuuUCC--UUCUCGGGGGcc -5'
21502 5' -54.8 NC_004812.1 + 37744 0.66 0.955385
Target:  5'- gCGgcccuCGCGGucGGcGAGGcGGCCCgCCGGg -3'
miRNA:   3'- -GCau---GUGCCuuUC-CUUC-UCGGG-GGCC- -5'
21502 5' -54.8 NC_004812.1 + 5416 0.66 0.955385
Target:  5'- --gACGCGGc-GGGccGGGGGCCCCCc- -3'
miRNA:   3'- gcaUGUGCCuuUCC--UUCUCGGGGGcc -5'
21502 5' -54.8 NC_004812.1 + 78956 0.66 0.955385
Target:  5'- gGUGCGcCGGggGucGGggGuGCgCCgGGg -3'
miRNA:   3'- gCAUGU-GCCuuU--CCuuCuCGgGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 6461 0.66 0.955385
Target:  5'- aCGacCGCGGGcccGGGGAGcGGGCCCUgCGGg -3'
miRNA:   3'- -GCauGUGCCU---UUCCUU-CUCGGGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 6843 0.66 0.955385
Target:  5'- gCGgcccuCGCGGucGGcGAGGcGGCCCgCCGGg -3'
miRNA:   3'- -GCau---GUGCCuuUC-CUUC-UCGGG-GGCC- -5'
21502 5' -54.8 NC_004812.1 + 78992 0.66 0.955385
Target:  5'- gGUGCGcCGGggGucGGggGuGCgCCgGGg -3'
miRNA:   3'- gCAUGU-GCCuuU--CCuuCuCGgGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 138041 0.66 0.955385
Target:  5'- gCGaACGCGGgcGGGcaccacGGCUCCCGGc -3'
miRNA:   3'- -GCaUGUGCCuuUCCuuc---UCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 118412 0.66 0.955385
Target:  5'- gGU-CGCGGAuguGGAccugccGGGCCCgCGGg -3'
miRNA:   3'- gCAuGUGCCUuu-CCUu-----CUCGGGgGCC- -5'
21502 5' -54.8 NC_004812.1 + 32625 0.66 0.954227
Target:  5'- gCGU-CGCaGGAGAcGggGAGCgagacgaacagcccCCCCGGg -3'
miRNA:   3'- -GCAuGUG-CCUUUcCuuCUCG--------------GGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 90684 0.66 0.951445
Target:  5'- gGUAgAUGGGGAGGcgcuuGAGcAGCaCCCaCGGg -3'
miRNA:   3'- gCAUgUGCCUUUCC-----UUC-UCG-GGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 110049 0.66 0.951445
Target:  5'- gGUGCGCGGcgacccGGGGcucGGGCCCgaCGGg -3'
miRNA:   3'- gCAUGUGCCuu----UCCUu--CUCGGGg-GCC- -5'
21502 5' -54.8 NC_004812.1 + 121700 0.66 0.951445
Target:  5'- --gACGCGGAgGAGGcggagcggcggcGAGAGCaggugCCCGGg -3'
miRNA:   3'- gcaUGUGCCU-UUCC------------UUCUCGg----GGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.