miRNA display CGI


Results 21 - 40 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 3' -60.7 NC_004812.1 + 125534 0.66 0.759779
Target:  5'- gCGCGuuUUCG-GGg-GGCGGGGGUUc -3'
miRNA:   3'- gGCGCucGAGCaCCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 156435 0.66 0.759779
Target:  5'- gCGCGuuUUCG-GGg-GGCGGGGGUUc -3'
miRNA:   3'- gGCGCucGAGCaCCagCUGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 105056 0.66 0.759779
Target:  5'- gCGCGugcGCUCGccgGGaCGGCcuGGGGUCu -3'
miRNA:   3'- gGCGCu--CGAGCa--CCaGCUGc-CCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 67267 0.66 0.757963
Target:  5'- uCUGUGGGCgcggGUGGguccaucguacgCGGCGGGGG-Cg -3'
miRNA:   3'- -GGCGCUCGag--CACCa-----------GCUGCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 56839 0.66 0.750658
Target:  5'- gCGCGuacucgaggagcAGCUCcagGGUCaccgaGAgGGGGGUCa -3'
miRNA:   3'- gGCGC------------UCGAGca-CCAG-----CUgCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 31731 0.66 0.750658
Target:  5'- cCUGgGGGUcCGgGGUgGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAgCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 153757 0.66 0.750658
Target:  5'- aCgGCGucCUCG-GcGUCGcgccgcguGCGGGGGUCg -3'
miRNA:   3'- -GgCGCucGAGCaC-CAGC--------UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 123004 0.66 0.750658
Target:  5'- gCCGCc-GUUCGUgguGGUCGAgGGGcGGUa -3'
miRNA:   3'- -GGCGcuCGAGCA---CCAGCUgCCC-CCAg -5'
21503 3' -60.7 NC_004812.1 + 30800 0.66 0.750658
Target:  5'- gCCGCGGGC-CGaGGgccCcACGGGGGg- -3'
miRNA:   3'- -GGCGCUCGaGCaCCa--GcUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 40059 0.66 0.750658
Target:  5'- gCCGCGGccGCUCGUgcgcuuuuccGGgCGGCGGGcGG-Cg -3'
miRNA:   3'- -GGCGCU--CGAGCA----------CCaGCUGCCC-CCaG- -5'
21503 3' -60.7 NC_004812.1 + 91119 0.66 0.750658
Target:  5'- gCCGUGGGgUCGcuUGGg-GGCGGGgccGGUCg -3'
miRNA:   3'- -GGCGCUCgAGC--ACCagCUGCCC---CCAG- -5'
21503 3' -60.7 NC_004812.1 + 86431 0.66 0.750658
Target:  5'- cCCGCGGGU---UGGUUGuuGGGGG-Cg -3'
miRNA:   3'- -GGCGCUCGagcACCAGCugCCCCCaG- -5'
21503 3' -60.7 NC_004812.1 + 122856 0.66 0.750658
Target:  5'- aCgGCGucCUCG-GcGUCGcgccgcguGCGGGGGUCg -3'
miRNA:   3'- -GgCGCucGAGCaC-CAGC--------UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 830 0.66 0.750658
Target:  5'- cCUGgGGGUcCGgGGUgGcCGGGGGUCc -3'
miRNA:   3'- -GGCgCUCGaGCaCCAgCuGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 133878 0.66 0.749741
Target:  5'- gCCGCGcgcgagacgGGCUCGUcgcccucGGUCG-CGGcGGGg- -3'
miRNA:   3'- -GGCGC---------UCGAGCA-------CCAGCuGCC-CCCag -5'
21503 3' -60.7 NC_004812.1 + 38704 0.66 0.74514
Target:  5'- gCCGCGGGagaagccuaccuguCUCGgcgGGcgucUCGgcggcucucucgggGCGGGGGUCg -3'
miRNA:   3'- -GGCGCUC--------------GAGCa--CC----AGC--------------UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 7803 0.66 0.74514
Target:  5'- gCCGCGGGagaagccuaccuguCUCGgcgGGcgucUCGgcggcucucucgggGCGGGGGUCg -3'
miRNA:   3'- -GGCGCUC--------------GAGCa--CC----AGC--------------UGCCCCCAG- -5'
21503 3' -60.7 NC_004812.1 + 72089 0.66 0.741443
Target:  5'- gCCGCccccGAGCUCGUu-UgGGCGGGGGc- -3'
miRNA:   3'- -GGCG----CUCGAGCAccAgCUGCCCCCag -5'
21503 3' -60.7 NC_004812.1 + 32182 0.66 0.741443
Target:  5'- gCCGCGGGCggGcGGUcCGA-GGGcGGUCc -3'
miRNA:   3'- -GGCGCUCGagCaCCA-GCUgCCC-CCAG- -5'
21503 3' -60.7 NC_004812.1 + 121914 0.66 0.741443
Target:  5'- gCGCGGGCcUGaGGUCGGgccugagcgcCGGGGGg- -3'
miRNA:   3'- gGCGCUCGaGCaCCAGCU----------GCCCCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.