miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21503 5' -59.3 NC_004812.1 + 62200 0.66 0.760153
Target:  5'- --cGAUUCgGcCC-CCCGGCCgCGCGa -3'
miRNA:   3'- aauUUGAGgCaGGuGGGCCGGgGCGU- -5'
21503 5' -59.3 NC_004812.1 + 150728 0.66 0.760153
Target:  5'- cUGAGC-CCGcgcccgcgCCcCCCGGCCCgCGCc -3'
miRNA:   3'- aAUUUGaGGCa-------GGuGGGCCGGG-GCGu -5'
21503 5' -59.3 NC_004812.1 + 101789 0.66 0.760153
Target:  5'- ---uACUCgGUCugcagCACCUGGCCCC-CAg -3'
miRNA:   3'- aauuUGAGgCAG-----GUGGGCCGGGGcGU- -5'
21503 5' -59.3 NC_004812.1 + 59895 0.66 0.760153
Target:  5'- -cGAGC-CCuaucgCCGCCgCGGaCCCCGCGg -3'
miRNA:   3'- aaUUUGaGGca---GGUGG-GCC-GGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 135243 0.66 0.760153
Target:  5'- -gGAGCUCgcgCGUCUacGCCCGGUUCCGa- -3'
miRNA:   3'- aaUUUGAG---GCAGG--UGGGCCGGGGCgu -5'
21503 5' -59.3 NC_004812.1 + 58210 0.66 0.760153
Target:  5'- ---cGCUgCGgcgCCGCCCcgcGGCCgCCGCGc -3'
miRNA:   3'- aauuUGAgGCa--GGUGGG---CCGG-GGCGU- -5'
21503 5' -59.3 NC_004812.1 + 119827 0.66 0.760153
Target:  5'- cUGAGC-CCGcgcccgcgCCcCCCGGCCCgCGCc -3'
miRNA:   3'- aAUUUGaGGCa-------GGuGGGCCGGG-GCGu -5'
21503 5' -59.3 NC_004812.1 + 149748 0.66 0.760153
Target:  5'- --cAGCUCCG-CC-CCCGGCgggCCGCc -3'
miRNA:   3'- aauUUGAGGCaGGuGGGCCGg--GGCGu -5'
21503 5' -59.3 NC_004812.1 + 139880 0.66 0.760153
Target:  5'- ----cCUgCGUCgACgggcgagcgggaCCGGCCCCGCGg -3'
miRNA:   3'- aauuuGAgGCAGgUG------------GGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 34725 0.66 0.760153
Target:  5'- ----cCUgCGgccCCGCCCcaGGCCCCGCc -3'
miRNA:   3'- aauuuGAgGCa--GGUGGG--CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 34053 0.66 0.750716
Target:  5'- ---cGCUCCccUCCGCCCccCCCCGCGc -3'
miRNA:   3'- aauuUGAGGc-AGGUGGGccGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 112062 0.66 0.750716
Target:  5'- -aGGGC-CCGUCCgucgaGCCCGGgCCaCGCc -3'
miRNA:   3'- aaUUUGaGGCAGG-----UGGGCCgGG-GCGu -5'
21503 5' -59.3 NC_004812.1 + 23609 0.66 0.750716
Target:  5'- gUUGGGCgccccggUCGUCCGCgCGGCCgCCGgGg -3'
miRNA:   3'- -AAUUUGa------GGCAGGUGgGCCGG-GGCgU- -5'
21503 5' -59.3 NC_004812.1 + 79628 0.66 0.750716
Target:  5'- -aGGGCggCCGUggCCGgcggcCCCGGCCCgGCGg -3'
miRNA:   3'- aaUUUGa-GGCA--GGU-----GGGCCGGGgCGU- -5'
21503 5' -59.3 NC_004812.1 + 104295 0.66 0.750716
Target:  5'- uUUAAGugCCGcCCACCCcgacgccggccgGGCCCCGUg -3'
miRNA:   3'- -AAUUUgaGGCaGGUGGG------------CCGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 29087 0.66 0.750716
Target:  5'- -cGAGCcUCG-CCgaggACgCCGGCCCCGCGa -3'
miRNA:   3'- aaUUUGaGGCaGG----UG-GGCCGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 3152 0.66 0.750716
Target:  5'- ---cGCUCCccUCCGCCCccCCCCGCGc -3'
miRNA:   3'- aauuUGAGGc-AGGUGGGccGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 21533 0.66 0.750716
Target:  5'- -cGGGCUCCGagCgCGCCCccGCCCCGUc -3'
miRNA:   3'- aaUUUGAGGCa-G-GUGGGc-CGGGGCGu -5'
21503 5' -59.3 NC_004812.1 + 43353 0.66 0.750716
Target:  5'- --uGACgaaaaCGUCCACCCc-CCCCGCGa -3'
miRNA:   3'- aauUUGag---GCAGGUGGGccGGGGCGU- -5'
21503 5' -59.3 NC_004812.1 + 1499 0.66 0.750716
Target:  5'- -gGAGCgCCGgCCgGCCCGcGCCgCCGCGc -3'
miRNA:   3'- aaUUUGaGGCaGG-UGGGC-CGG-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.