miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 133876 0.65 0.743819
Target:  5'- aCGCCGcGcGCgagacggGcUCGUCGCCCucggucgcggcgggGCCUCu -3'
miRNA:   3'- gGCGGC-CaCGa------C-AGCAGCGGG--------------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 142210 0.66 0.737297
Target:  5'- gCCGCCGGcGUcGUCGU-GCUgGCCg- -3'
miRNA:   3'- -GGCGGCCaCGaCAGCAgCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 33898 0.66 0.737297
Target:  5'- uCgGCCGucGCgaUCGcCGCCCGCCUCc -3'
miRNA:   3'- -GgCGGCcaCGacAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 140624 0.66 0.737297
Target:  5'- cCUGCacCGGUGCUGUaGaCGCgCCGCCg- -3'
miRNA:   3'- -GGCG--GCCACGACAgCaGCG-GGUGGag -5'
21505 3' -61.1 NC_004812.1 + 138423 0.66 0.737297
Target:  5'- aCGCgGGggGCUGcCGgCGCCCcaucgcCCUCa -3'
miRNA:   3'- gGCGgCCa-CGACaGCaGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 146349 0.66 0.737297
Target:  5'- gCCGUCGGcUGC-GUCGcggCGUUCGuCCUCg -3'
miRNA:   3'- -GGCGGCC-ACGaCAGCa--GCGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 127479 0.66 0.737297
Target:  5'- aCCGCCcGUGC-GUCGcgaCGUCgACCUUg -3'
miRNA:   3'- -GGCGGcCACGaCAGCa--GCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 52295 0.66 0.727908
Target:  5'- gCCGCCcccggaGGcGCcGUccccgcCGUCGCCCGCCg- -3'
miRNA:   3'- -GGCGG------CCaCGaCA------GCAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 97111 0.66 0.727908
Target:  5'- uCCGCCGGggGCcG-CGcCGCCgcggcggcgCGCCUCu -3'
miRNA:   3'- -GGCGGCCa-CGaCaGCaGCGG---------GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 97165 0.66 0.727908
Target:  5'- aUCGCCGGggucgucGUggggGUCGUCGUCguCCUg -3'
miRNA:   3'- -GGCGGCCa------CGa---CAGCAGCGGguGGAg -5'
21505 3' -61.1 NC_004812.1 + 80222 0.66 0.727908
Target:  5'- cCCGCCGG-GCca---UCGCgCGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGacagcAGCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 122825 0.66 0.727908
Target:  5'- gCGCagCGG-GCgaUGUCGUCGgCCGCCg- -3'
miRNA:   3'- gGCG--GCCaCG--ACAGCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 34887 0.66 0.727908
Target:  5'- gCGCCGGcccgggcaccUGCUcUCGcCGCCgcucCGCCUCc -3'
miRNA:   3'- gGCGGCC----------ACGAcAGCaGCGG----GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 110294 0.66 0.727908
Target:  5'- aCUGgCGGcgGCUGUCGcccgcgCgGCCCGCCg- -3'
miRNA:   3'- -GGCgGCCa-CGACAGCa-----G-CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 141536 0.66 0.727908
Target:  5'- gCCGgCGGgcgGCgacgUGUCGcCGCCagucCGCCUCc -3'
miRNA:   3'- -GGCgGCCa--CG----ACAGCaGCGG----GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 112596 0.66 0.726965
Target:  5'- gCCGCCGGagccuccUGCUGgccUCGgccaUGUgCACCUCc -3'
miRNA:   3'- -GGCGGCC-------ACGAC---AGCa---GCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 50261 0.66 0.718444
Target:  5'- gCCGUCGGUGUcGcUGUCGaCCCggcGCCUg -3'
miRNA:   3'- -GGCGGCCACGaCaGCAGC-GGG---UGGAg -5'
21505 3' -61.1 NC_004812.1 + 427 0.66 0.718444
Target:  5'- gCGCgCGGcGCUcUCGcgcgCGCCCGCCg- -3'
miRNA:   3'- gGCG-GCCaCGAcAGCa---GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 142473 0.66 0.718444
Target:  5'- -aGCCGGguccGCcGUUccccgucgaGUCGCCCGCCa- -3'
miRNA:   3'- ggCGGCCa---CGaCAG---------CAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 144680 0.66 0.718444
Target:  5'- cUCGCgGG-GCcGUCGUCGUCCGgCa- -3'
miRNA:   3'- -GGCGgCCaCGaCAGCAGCGGGUgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.