miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 133876 0.65 0.743819
Target:  5'- aCGCCGcGcGCgagacggGcUCGUCGCCCucggucgcggcgggGCCUCu -3'
miRNA:   3'- gGCGGC-CaCGa------C-AGCAGCGGG--------------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 142210 0.66 0.737297
Target:  5'- gCCGCCGGcGUcGUCGU-GCUgGCCg- -3'
miRNA:   3'- -GGCGGCCaCGaCAGCAgCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 51119 0.66 0.689678
Target:  5'- gCCGCCGG-GCccgGUCGcCuGCuCCGuCCUCc -3'
miRNA:   3'- -GGCGGCCaCGa--CAGCaG-CG-GGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 97111 0.66 0.727908
Target:  5'- uCCGCCGGggGCcG-CGcCGCCgcggcggcgCGCCUCu -3'
miRNA:   3'- -GGCGGCCa-CGaCaGCaGCGG---------GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111331 0.66 0.708912
Target:  5'- cCUGUCGG-GggGUCGccCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCaCgaCAGCa-GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 97165 0.66 0.727908
Target:  5'- aUCGCCGGggucgucGUggggGUCGUCGUCguCCUg -3'
miRNA:   3'- -GGCGGCCa------CGa---CAGCAGCGGguGGAg -5'
21505 3' -61.1 NC_004812.1 + 117637 0.66 0.689678
Target:  5'- gCCGCCGGgcgcgGCgggGUCGcggGCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa----CGa--CAGCag-CGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 33898 0.66 0.737297
Target:  5'- uCgGCCGucGCgaUCGcCGCCCGCCUCc -3'
miRNA:   3'- -GgCGGCcaCGacAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 25566 0.66 0.717494
Target:  5'- cUCGCCGG-GCUcgcggaagacgaaG-CGcCGCCCcGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGA-------------CaGCaGCGGG-UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 72189 0.66 0.708912
Target:  5'- gCgGCCGGggGCcccggGUCGUCGCggggcguccgCgGCCUCg -3'
miRNA:   3'- -GgCGGCCa-CGa----CAGCAGCG----------GgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 138733 0.66 0.717494
Target:  5'- cCCGCgGcGUGCcgGcCgGUCGCCCccgcgguGCCUCu -3'
miRNA:   3'- -GGCGgC-CACGa-CaG-CAGCGGG-------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 148538 0.66 0.689678
Target:  5'- gCCGCCGGgcgcgGCgggGUCGcggGCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa----CGa--CAGCag-CGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 146349 0.66 0.737297
Target:  5'- gCCGUCGGcUGC-GUCGcggCGUUCGuCCUCg -3'
miRNA:   3'- -GGCGGCC-ACGaCAGCa--GCGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 50261 0.66 0.718444
Target:  5'- gCCGUCGGUGUcGcUGUCGaCCCggcGCCUg -3'
miRNA:   3'- -GGCGGCCACGaCaGCAGC-GGG---UGGAg -5'
21505 3' -61.1 NC_004812.1 + 52295 0.66 0.727908
Target:  5'- gCCGCCcccggaGGcGCcGUccccgcCGUCGCCCGCCg- -3'
miRNA:   3'- -GGCGG------CCaCGaCA------GCAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 101511 0.66 0.703164
Target:  5'- aCCGCCGG-GUcgucgggcccccccaUGUgcaUGUCGCCCACg-- -3'
miRNA:   3'- -GGCGGCCaCG---------------ACA---GCAGCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 142473 0.66 0.718444
Target:  5'- -aGCCGGguccGCcGUUccccgucgaGUCGCCCGCCa- -3'
miRNA:   3'- ggCGGCCa---CGaCAG---------CAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 138423 0.66 0.737297
Target:  5'- aCGCgGGggGCUGcCGgCGCCCcaucgcCCUCa -3'
miRNA:   3'- gGCGgCCa-CGACaGCaGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 140624 0.66 0.737297
Target:  5'- cCUGCacCGGUGCUGUaGaCGCgCCGCCg- -3'
miRNA:   3'- -GGCG--GCCACGACAgCaGCG-GGUGGag -5'
21505 3' -61.1 NC_004812.1 + 427 0.66 0.718444
Target:  5'- gCGCgCGGcGCUcUCGcgcgCGCCCGCCg- -3'
miRNA:   3'- gGCG-GCCaCGAcAGCa---GCGGGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.