miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 105403 0.66 0.693541
Target:  5'- gCGCCGGUGCcGgcgcucggCGgggcccggcgcccgCGCCCGCC-Cg -3'
miRNA:   3'- gGCGGCCACGaCa-------GCa-------------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 128092 0.66 0.697396
Target:  5'- gCCGCCGGgGCUGgucuuagguggccgCGgagcccccuuucccCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCaCGACa-------------GCa-------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 97165 0.66 0.727908
Target:  5'- aUCGCCGGggucgucGUggggGUCGUCGUCguCCUg -3'
miRNA:   3'- -GGCGGCCa------CGa---CAGCAGCGGguGGAg -5'
21505 3' -61.1 NC_004812.1 + 122825 0.66 0.727908
Target:  5'- gCGCagCGG-GCgaUGUCGUCGgCCGCCg- -3'
miRNA:   3'- gGCG--GCCaCG--ACAGCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 33898 0.66 0.737297
Target:  5'- uCgGCCGucGCgaUCGcCGCCCGCCUCc -3'
miRNA:   3'- -GgCGGCcaCGacAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 128837 0.66 0.708912
Target:  5'- cCCGgCGG-GCUGg-GcCGCCCGCCc- -3'
miRNA:   3'- -GGCgGCCaCGACagCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 127479 0.66 0.737297
Target:  5'- aCCGCCcGUGC-GUCGcgaCGUCgACCUUg -3'
miRNA:   3'- -GGCGGcCACGaCAGCa--GCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 146349 0.66 0.737297
Target:  5'- gCCGUCGGcUGC-GUCGcggCGUUCGuCCUCg -3'
miRNA:   3'- -GGCGGCC-ACGaCAGCa--GCGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 138423 0.66 0.737297
Target:  5'- aCGCgGGggGCUGcCGgCGCCCcaucgcCCUCa -3'
miRNA:   3'- gGCGgCCa-CGACaGCaGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 140624 0.66 0.737297
Target:  5'- cCUGCacCGGUGCUGUaGaCGCgCCGCCg- -3'
miRNA:   3'- -GGCG--GCCACGACAgCaGCG-GGUGGag -5'
21505 3' -61.1 NC_004812.1 + 97111 0.66 0.727908
Target:  5'- uCCGCCGGggGCcG-CGcCGCCgcggcggcgCGCCUCu -3'
miRNA:   3'- -GGCGGCCa-CGaCaGCaGCGG---------GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 51119 0.66 0.689678
Target:  5'- gCCGCCGG-GCccgGUCGcCuGCuCCGuCCUCc -3'
miRNA:   3'- -GGCGGCCaCGa--CAGCaG-CG-GGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 112596 0.66 0.726965
Target:  5'- gCCGCCGGagccuccUGCUGgccUCGgccaUGUgCACCUCc -3'
miRNA:   3'- -GGCGGCC-------ACGAC---AGCa---GCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141536 0.66 0.727908
Target:  5'- gCCGgCGGgcgGCgacgUGUCGcCGCCagucCGCCUCc -3'
miRNA:   3'- -GGCgGCCa--CG----ACAGCaGCGG----GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 110294 0.66 0.727908
Target:  5'- aCUGgCGGcgGCUGUCGcccgcgCgGCCCGCCg- -3'
miRNA:   3'- -GGCgGCCa-CGACAGCa-----G-CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 148538 0.66 0.689678
Target:  5'- gCCGCCGGgcgcgGCgggGUCGcggGCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa----CGa--CAGCag-CGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 97558 0.66 0.708912
Target:  5'- uCCaGCCGGUGCUG-CGccggCGCgUgauggACCUCu -3'
miRNA:   3'- -GG-CGGCCACGACaGCa---GCGgG-----UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 43568 0.66 0.718444
Target:  5'- aCGCCGGccgcgGCcGUcCGUCcggcgcGCCCGcCCUCg -3'
miRNA:   3'- gGCGGCCa----CGaCA-GCAG------CGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 80222 0.66 0.727908
Target:  5'- cCCGCCGG-GCca---UCGCgCGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGacagcAGCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 99927 0.67 0.650745
Target:  5'- gCCGCCGaagaUGCgcGUCGacgccgCGCCCGCgUCg -3'
miRNA:   3'- -GGCGGCc---ACGa-CAGCa-----GCGGGUGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.