miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 76295 0.67 0.631167
Target:  5'- gCCGCCuccagcagcgcGGcGCgGUCGcCGUCCGCCUg -3'
miRNA:   3'- -GGCGG-----------CCaCGaCAGCaGCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 96363 0.67 0.631167
Target:  5'- cCCGaCGGUGCUGcCG-CGgCCCACgaUCg -3'
miRNA:   3'- -GGCgGCCACGACaGCaGC-GGGUGg-AG- -5'
21505 3' -61.1 NC_004812.1 + 131362 0.67 0.638022
Target:  5'- aCCGCgGcUGCcGUCuacacgaucgcgcgGUCGCCgGCCUCa -3'
miRNA:   3'- -GGCGgCcACGaCAG--------------CAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 42385 0.67 0.650745
Target:  5'- gUCGCCGGUGUUccccgcccucGUCGgcaUCGUCCggggucACCUCc -3'
miRNA:   3'- -GGCGGCCACGA----------CAGC---AGCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 99927 0.67 0.650745
Target:  5'- gCCGCCGaagaUGCgcGUCGacgccgCGCCCGCgUCg -3'
miRNA:   3'- -GGCGGCc---ACGa-CAGCa-----GCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 79061 0.67 0.660517
Target:  5'- gCgGCCGGacGCguuUGcUCGUCGCCCcccgauCCUCg -3'
miRNA:   3'- -GgCGGCCa-CG---AC-AGCAGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 95499 0.67 0.660517
Target:  5'- gCGCCGGcGCgccgCGggGCgCCGCCUCg -3'
miRNA:   3'- gGCGGCCaCGaca-GCagCG-GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 37108 0.67 0.660517
Target:  5'- gCCGUcgaggCGGUGUUGgcgcccgCGUCGgCCGCCg- -3'
miRNA:   3'- -GGCG-----GCCACGACa------GCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 135498 0.67 0.631167
Target:  5'- gCCGCCuggcugGGUGCggcucUGUCGgCGUcuucgCCGCCUCg -3'
miRNA:   3'- -GGCGG------CCACG-----ACAGCaGCG-----GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 66743 0.67 0.631167
Target:  5'- gCCGUCGGaGCaG-CG-CGCCgGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4055 0.67 0.679991
Target:  5'- gCCGCgGcGUcGUcGUCGUCGUCguCCUCg -3'
miRNA:   3'- -GGCGgC-CA-CGaCAGCAGCGGguGGAG- -5'
21505 3' -61.1 NC_004812.1 + 143414 0.67 0.679991
Target:  5'- aUGCUGGUGgaGU--UCGCCUACCa- -3'
miRNA:   3'- gGCGGCCACgaCAgcAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 129564 0.67 0.679991
Target:  5'- gCCGCgGcGUcGUcGUCGUCGUCguCCUCg -3'
miRNA:   3'- -GGCGgC-CA-CGaCAGCAGCGGguGGAG- -5'
21505 3' -61.1 NC_004812.1 + 3631 0.67 0.670268
Target:  5'- gCGCCGGcggGCgcgcggCGcCGCCCGCgUCu -3'
miRNA:   3'- gGCGGCCa--CGaca---GCaGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 118335 0.67 0.649767
Target:  5'- aCGCCGGagcaguuUGCgcgGcCGgacaaCGCCCACCUg -3'
miRNA:   3'- gGCGGCC-------ACGa--CaGCa----GCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 102016 0.67 0.670268
Target:  5'- gCGCCGccGCgaggGUgGcUCGUCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGa---CAgC-AGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 26593 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 82733 0.67 0.670268
Target:  5'- gCCGCCGa-GCUGUaCGcCGCCCugACCg- -3'
miRNA:   3'- -GGCGGCcaCGACA-GCaGCGGG--UGGag -5'
21505 3' -61.1 NC_004812.1 + 151091 0.67 0.679991
Target:  5'- cCCGCCGuGUcccuGCUGcgCGgCGCCCGgcguCCUCc -3'
miRNA:   3'- -GGCGGC-CA----CGACa-GCaGCGGGU----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 153774 0.67 0.679991
Target:  5'- gCGCCGcGUGCggggGUCGUUGaCCACg-- -3'
miRNA:   3'- gGCGGC-CACGa---CAGCAGCgGGUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.