miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 82733 0.67 0.670268
Target:  5'- gCCGCCGa-GCUGUaCGcCGCCCugACCg- -3'
miRNA:   3'- -GGCGGCcaCGACA-GCaGCGGG--UGGag -5'
21505 3' -61.1 NC_004812.1 + 38201 0.67 0.660517
Target:  5'- gCCGCCuGUcGCc--CGUCGCCCGgcCCUCu -3'
miRNA:   3'- -GGCGGcCA-CGacaGCAGCGGGU--GGAG- -5'
21505 3' -61.1 NC_004812.1 + 3631 0.67 0.670268
Target:  5'- gCGCCGGcggGCgcgcggCGcCGCCCGCgUCu -3'
miRNA:   3'- gGCGGCCa--CGaca---GCaGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 26593 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 153774 0.67 0.679991
Target:  5'- gCGCCGcGUGCggggGUCGUUGaCCACg-- -3'
miRNA:   3'- gGCGGC-CACGa---CAGCAGCgGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 151091 0.67 0.679991
Target:  5'- cCCGCCGuGUcccuGCUGcgCGgCGCCCGgcguCCUCc -3'
miRNA:   3'- -GGCGGC-CA----CGACa-GCaGCGGGU----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 98786 0.67 0.679991
Target:  5'- gCCGCCGaGgcggcGCUGagGUgGCCCAcgaggccgaggcCCUCg -3'
miRNA:   3'- -GGCGGC-Ca----CGACagCAgCGGGU------------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 143414 0.67 0.679991
Target:  5'- aUGCUGGUGgaGU--UCGCCUACCa- -3'
miRNA:   3'- gGCGGCCACgaCAgcAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 4055 0.67 0.679991
Target:  5'- gCCGCgGcGUcGUcGUCGUCGUCguCCUCg -3'
miRNA:   3'- -GGCGgC-CA-CGaCAGCAGCGGguGGAG- -5'
21505 3' -61.1 NC_004812.1 + 27627 0.67 0.679991
Target:  5'- cCCGCCGc-GCUGaCGgcgcgacCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCcaCGACaGCa------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 96363 0.67 0.631167
Target:  5'- cCCGaCGGUGCUGcCG-CGgCCCACgaUCg -3'
miRNA:   3'- -GGCgGCCACGACaGCaGC-GGGUGg-AG- -5'
21505 3' -61.1 NC_004812.1 + 76295 0.67 0.631167
Target:  5'- gCCGCCuccagcagcgcGGcGCgGUCGcCGUCCGCCUg -3'
miRNA:   3'- -GGCGG-----------CCaCGaCAGCaGCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 155121 0.67 0.631167
Target:  5'- gCCgGCCGGcGCUccGcCGcCGCCCGCCg- -3'
miRNA:   3'- -GG-CGGCCaCGA--CaGCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 66743 0.67 0.631167
Target:  5'- gCCGUCGGaGCaG-CG-CGCCgGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 135498 0.67 0.631167
Target:  5'- gCCGCCuggcugGGUGCggcucUGUCGgCGUcuucgCCGCCUCg -3'
miRNA:   3'- -GGCGG------CCACG-----ACAGCaGCG-----GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141402 0.68 0.592072
Target:  5'- aCGCC-GUGCUGgagCG-CGCCUGCCg- -3'
miRNA:   3'- gGCGGcCACGACa--GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 13626 0.68 0.58235
Target:  5'- -gGCUGGcGU--UCGUCGCCC-CCUCg -3'
miRNA:   3'- ggCGGCCaCGacAGCAGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141167 0.68 0.600846
Target:  5'- aUCGCCGcGguucUGCUGUCGcuggcgguugcgcUCGCCCGCgUUc -3'
miRNA:   3'- -GGCGGC-C----ACGACAGC-------------AGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 101281 0.68 0.598895
Target:  5'- gCCGCCGcaGCUccgacgcccgggcGUCGgcccgcgccgaGCCCACCUCg -3'
miRNA:   3'- -GGCGGCcaCGA-------------CAGCag---------CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 104274 0.68 0.58235
Target:  5'- cCCGCCGGgGCgGgccgCGUauuuaagugcCGCCCACCcCg -3'
miRNA:   3'- -GGCGGCCaCGaCa---GCA----------GCGGGUGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.