miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 141831 0.68 0.608659
Target:  5'- gCGCgGGUcggcggggacgcgaGCgUGUCGUCGCCC-CCg- -3'
miRNA:   3'- gGCGgCCA--------------CG-ACAGCAGCGGGuGGag -5'
21505 3' -61.1 NC_004812.1 + 79125 0.68 0.57266
Target:  5'- cCCGCCGG-GCccggGUCccaGCCCcGCCUCc -3'
miRNA:   3'- -GGCGGCCaCGa---CAGcagCGGG-UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 54422 0.68 0.58235
Target:  5'- gCCGCCGGg--UGUCGauggGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCacgACAGCag--CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 57145 0.68 0.592072
Target:  5'- gCCGCCgcGGUGCUGgggcugcgCGaCGCgguccaCCGCCUCc -3'
miRNA:   3'- -GGCGG--CCACGACa-------GCaGCG------GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 58194 0.68 0.57266
Target:  5'- cCCgGCCuGGaacacGCgGUCGUUGCCCGCCa- -3'
miRNA:   3'- -GG-CGG-CCa----CGaCAGCAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 97217 0.68 0.57266
Target:  5'- cCCGgCGGUGCccaCGUCGCUgGCCa- -3'
miRNA:   3'- -GGCgGCCACGacaGCAGCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 117398 0.68 0.57266
Target:  5'- gCGCCGGcccgcUGCUG-CGcUCGCUgGCCUg -3'
miRNA:   3'- gGCGGCC-----ACGACaGC-AGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 139432 0.68 0.58235
Target:  5'- gCgGCCGGUGCUGgcccUGUCC-CCUCg -3'
miRNA:   3'- -GgCGGCCACGACagcaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 70497 0.68 0.58235
Target:  5'- --uCCGGaGCUGUCGUCGUaugcgccaacaCGCCUCg -3'
miRNA:   3'- ggcGGCCaCGACAGCAGCGg----------GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 153701 0.68 0.58235
Target:  5'- uUCGCCGGcGCcGUCGaguaccUCGgCCugCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCAGC------AGCgGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 9450 0.68 0.57266
Target:  5'- gCGCCuucuGGUGCUGUC-UgGCCCACg-- -3'
miRNA:   3'- gGCGG----CCACGACAGcAgCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 140644 0.68 0.58235
Target:  5'- gCCGCCGGccGCggggcGUCcgGUCGCCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa-CGa----CAG--CAGCGGG-UGGag -5'
21505 3' -61.1 NC_004812.1 + 104274 0.68 0.58235
Target:  5'- cCCGCCGGgGCgGgccgCGUauuuaagugcCGCCCACCcCg -3'
miRNA:   3'- -GGCGGCCaCGaCa---GCA----------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 141402 0.68 0.592072
Target:  5'- aCGCC-GUGCUGgagCG-CGCCUGCCg- -3'
miRNA:   3'- gGCGGcCACGACa--GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 101281 0.68 0.598895
Target:  5'- gCCGCCGcaGCUccgacgcccgggcGUCGgcccgcgccgaGCCCACCUCg -3'
miRNA:   3'- -GGCGGCcaCGA-------------CAGCag---------CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141167 0.68 0.600846
Target:  5'- aUCGCCGcGguucUGCUGUCGcuggcgguugcgcUCGCCCGCgUUc -3'
miRNA:   3'- -GGCGGC-C----ACGACAGC-------------AGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 28193 0.68 0.58235
Target:  5'- uUCGCCGGcGCcGUCGaguaccUCGgCCugCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCAGC------AGCgGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 13626 0.68 0.58235
Target:  5'- -gGCUGGcGU--UCGUCGCCC-CCUCg -3'
miRNA:   3'- ggCGGCCaCGacAGCAGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 5781 0.69 0.543844
Target:  5'- -aGCgCGGg---GUCGgCGCCCGCCUCg -3'
miRNA:   3'- ggCG-GCCacgaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 61523 0.69 0.543844
Target:  5'- aCCGCCcucGGggGUUGUCGUUGCCUAgCa- -3'
miRNA:   3'- -GGCGG---CCa-CGACAGCAGCGGGUgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.