Results 21 - 40 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21505 | 3' | -61.1 | NC_004812.1 | + | 58324 | 0.72 | 0.401115 |
Target: 5'- gCGCCGGggUGCUcGUCGaucgCGUCCACCa- -3' miRNA: 3'- gGCGGCC--ACGA-CAGCa---GCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 138571 | 0.72 | 0.401115 |
Target: 5'- gCUGCUGGUGCcgGUCGUCGgcuCCCGCg-- -3' miRNA: 3'- -GGCGGCCACGa-CAGCAGC---GGGUGgag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 23689 | 0.72 | 0.401115 |
Target: 5'- -gGCCGGgguccGCUG-CGUgcgCGCCUACCUCu -3' miRNA: 3'- ggCGGCCa----CGACaGCA---GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 102130 | 0.72 | 0.401115 |
Target: 5'- cCCGCCGucGCUGUCGUaGUCCaugGCCUCc -3' miRNA: 3'- -GGCGGCcaCGACAGCAgCGGG---UGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 55242 | 0.71 | 0.438079 |
Target: 5'- cUCGCCGacGCcGUCGUgcggguggccgcgaaCGCCCGCCUCu -3' miRNA: 3'- -GGCGGCcaCGaCAGCA---------------GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 51404 | 0.71 | 0.417672 |
Target: 5'- gCCGCCGGcGCg--C-UCGCCCACCa- -3' miRNA: 3'- -GGCGGCCaCGacaGcAGCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 98321 | 0.71 | 0.409341 |
Target: 5'- gCGCgGGUGCUGgcucgCGUaCGCCgACCg- -3' miRNA: 3'- gGCGgCCACGACa----GCA-GCGGgUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 72502 | 0.71 | 0.407688 |
Target: 5'- cCCGCCGGgccuaggcggcgGCgcucgGUCGcCGuCCCGCUUCg -3' miRNA: 3'- -GGCGGCCa-----------CGa----CAGCaGC-GGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 119285 | 0.71 | 0.417672 |
Target: 5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3' miRNA: 3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 33457 | 0.71 | 0.417672 |
Target: 5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3' miRNA: 3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 150186 | 0.71 | 0.417672 |
Target: 5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3' miRNA: 3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 137656 | 0.71 | 0.451997 |
Target: 5'- -gGCCGGUG-UGUC-UCGCUCGCUUCc -3' miRNA: 3'- ggCGGCCACgACAGcAGCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 19786 | 0.71 | 0.451997 |
Target: 5'- gCGCCGGgGCgaagaggGcCGcUCgGCCCACCUCg -3' miRNA: 3'- gGCGGCCaCGa------CaGC-AG-CGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 100910 | 0.71 | 0.451997 |
Target: 5'- gCGCgGGUGCaGgcgCG-CGCCCACCg- -3' miRNA: 3'- gGCGgCCACGaCa--GCaGCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 104510 | 0.71 | 0.443269 |
Target: 5'- cCCGCgGGacggGCgGUCGUCGCgCGCC-Cg -3' miRNA: 3'- -GGCGgCCa---CGaCAGCAGCGgGUGGaG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 2556 | 0.71 | 0.417672 |
Target: 5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3' miRNA: 3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 67349 | 0.71 | 0.409341 |
Target: 5'- -aGCUGGUGCagacgauguUGUCGUC-CCCGCCg- -3' miRNA: 3'- ggCGGCCACG---------ACAGCAGcGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 123065 | 0.71 | 0.417672 |
Target: 5'- -aGCaCGG-GCcgGUCGUCGUCgGCCUCg -3' miRNA: 3'- ggCG-GCCaCGa-CAGCAGCGGgUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 121320 | 0.71 | 0.434638 |
Target: 5'- gCGCgGGUGCUGcccacccggcUCGUgGCCUACCc- -3' miRNA: 3'- gGCGgCCACGAC----------AGCAgCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 91619 | 0.7 | 0.506207 |
Target: 5'- aC-CCGGggggggaGCUGUCcauGUCGCUCGCCUCc -3' miRNA: 3'- gGcGGCCa------CGACAG---CAGCGGGUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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