miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 94213 0.69 0.543844
Target:  5'- cCUGCCGGgucUGCUccucgccggCGUCGCCgGCCUg -3'
miRNA:   3'- -GGCGGCC---ACGAca-------GCAGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 5781 0.69 0.543844
Target:  5'- -aGCgCGGg---GUCGgCGCCCGCCUCg -3'
miRNA:   3'- ggCG-GCCacgaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 60011 0.69 0.534341
Target:  5'- uCCGCgGG-GCcGgCGUCGUCgACCUCg -3'
miRNA:   3'- -GGCGgCCaCGaCaGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111201 0.69 0.528668
Target:  5'- -gGCUGGUGCUcggcugguacGUCGUguucggggcgaacccCGCCCACCg- -3'
miRNA:   3'- ggCGGCCACGA----------CAGCA---------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 122645 0.69 0.524898
Target:  5'- gCCGCCcaccGGcgagGCUGUCGUC-CUCGuCCUCg -3'
miRNA:   3'- -GGCGG----CCa---CGACAGCAGcGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 49431 0.69 0.515518
Target:  5'- gCCGCCGcGUcGUggacaUGUCGUCcgguGCCCGCCa- -3'
miRNA:   3'- -GGCGGC-CA-CG-----ACAGCAG----CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 31209 0.69 0.515518
Target:  5'- cCCGCUGGUGCUGUaguaGUCgaaaacguaguGCCCgucgGCgUCg -3'
miRNA:   3'- -GGCGGCCACGACAg---CAG-----------CGGG----UGgAG- -5'
21505 3' -61.1 NC_004812.1 + 16501 0.69 0.563009
Target:  5'- gCGUCcGUGCUGcgCG-CGCCCGCCa- -3'
miRNA:   3'- gGCGGcCACGACa-GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 25825 0.69 0.563009
Target:  5'- uCCGCCuGGUuCUGg-GUCGCC-GCCUCg -3'
miRNA:   3'- -GGCGG-CCAcGACagCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 145356 0.69 0.563009
Target:  5'- gCCGUgGG-GCUGgcCGUUGCCgGCCUg -3'
miRNA:   3'- -GGCGgCCaCGACa-GCAGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 9089 0.69 0.563009
Target:  5'- uCCGUCGGUcGUU-UCGcCGgCCGCCUCg -3'
miRNA:   3'- -GGCGGCCA-CGAcAGCaGCgGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 104863 0.69 0.563009
Target:  5'- gCGCCGGcggccgcgGCggucGUCGUCGCCguCGCCgUCg -3'
miRNA:   3'- gGCGGCCa-------CGa---CAGCAGCGG--GUGG-AG- -5'
21505 3' -61.1 NC_004812.1 + 79055 0.69 0.557239
Target:  5'- gCGCCGGUcgugcccguggugcaGCUccucgaGUCGcUGCCCGCCUUu -3'
miRNA:   3'- gGCGGCCA---------------CGA------CAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 17636 0.69 0.563009
Target:  5'- gCCGUCGGUGCcggggcuucgGUCGccggcggcUCGCCC-UCUCg -3'
miRNA:   3'- -GGCGGCCACGa---------CAGC--------AGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 73722 0.69 0.553402
Target:  5'- cCCGCgaggaGGUGCgcgUGUCGgcCGCCCucaaccACCUCa -3'
miRNA:   3'- -GGCGg----CCACG---ACAGCa-GCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141167 0.68 0.600846
Target:  5'- aUCGCCGcGguucUGCUGUCGcuggcgguugcgcUCGCCCGCgUUc -3'
miRNA:   3'- -GGCGGC-C----ACGACAGC-------------AGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 101281 0.68 0.598895
Target:  5'- gCCGCCGcaGCUccgacgcccgggcGUCGgcccgcgccgaGCCCACCUCg -3'
miRNA:   3'- -GGCGGCcaCGA-------------CAGCag---------CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141402 0.68 0.592072
Target:  5'- aCGCC-GUGCUGgagCG-CGCCUGCCg- -3'
miRNA:   3'- gGCGGcCACGACa--GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 104274 0.68 0.58235
Target:  5'- cCCGCCGGgGCgGgccgCGUauuuaagugcCGCCCACCcCg -3'
miRNA:   3'- -GGCGGCCaCGaCa---GCA----------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 117398 0.68 0.57266
Target:  5'- gCGCCGGcccgcUGCUG-CGcUCGCUgGCCUg -3'
miRNA:   3'- gGCGGCC-----ACGACaGC-AGCGGgUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.