Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21505 | 3' | -61.1 | NC_004812.1 | + | 58445 | 1.11 | 0.000861 |
Target: 5'- gCCGCCGGUGCUGUCGUCGCCCACCUCg -3' miRNA: 3'- -GGCGGCCACGACAGCAGCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 38635 | 0.75 | 0.242658 |
Target: 5'- gCGCCGG-GCgagGcCGggggCGCCCGCCUCc -3' miRNA: 3'- gGCGGCCaCGa--CaGCa---GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 7734 | 0.75 | 0.242658 |
Target: 5'- gCGCCGG-GCgagGcCGggggCGCCCGCCUCc -3' miRNA: 3'- gGCGGCCaCGa--CaGCa---GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 116607 | 0.75 | 0.254081 |
Target: 5'- gCCGCCGcGU-CUGUCGcggcCGCUCGCCUCu -3' miRNA: 3'- -GGCGGC-CAcGACAGCa---GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 29980 | 0.74 | 0.27204 |
Target: 5'- gCUGCCGGagGCUGcCGUCGCCCucgaugGCCa- -3' miRNA: 3'- -GGCGGCCa-CGACaGCAGCGGG------UGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 43965 | 0.74 | 0.278248 |
Target: 5'- uCCGCUGGUGgaGUCcgaguccccgcgGUCGCCCgaccggccgGCCUCc -3' miRNA: 3'- -GGCGGCCACgaCAG------------CAGCGGG---------UGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 28197 | 0.74 | 0.280133 |
Target: 5'- aCCGCCGGUGCgcgaucagaaagucgCGUCGCuCCGCUUg -3' miRNA: 3'- -GGCGGCCACGaca------------GCAGCG-GGUGGAg -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 110070 | 0.74 | 0.291004 |
Target: 5'- gCUGCCGaccGUGUUGUCGUUcgcgGCCCugCUCc -3' miRNA: 3'- -GGCGGC---CACGACAGCAG----CGGGugGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 56441 | 0.73 | 0.32488 |
Target: 5'- gCGCCGG-GCgaUCGUCGCCC-CCUg -3' miRNA: 3'- gGCGGCCaCGacAGCAGCGGGuGGAg -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 131253 | 0.73 | 0.331997 |
Target: 5'- aCGCCGGcgaGCccgugGUCGcCGCCCACCg- -3' miRNA: 3'- gGCGGCCa--CGa----CAGCaGCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 93758 | 0.73 | 0.339229 |
Target: 5'- aCGUCGGcGCgGUCGaccaCGUCCACCUCg -3' miRNA: 3'- gGCGGCCaCGaCAGCa---GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 69879 | 0.72 | 0.354032 |
Target: 5'- gCGCUGGUcGCcGUCGUCGUCCGgccgcuCCUCc -3' miRNA: 3'- gGCGGCCA-CGaCAGCAGCGGGU------GGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 121897 | 0.72 | 0.361602 |
Target: 5'- gCUGCCGGUGUacgagGcgcUCGUCGCCUggcucacgcacGCCUCg -3' miRNA: 3'- -GGCGGCCACGa----C---AGCAGCGGG-----------UGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 100987 | 0.72 | 0.369285 |
Target: 5'- gCGCCGGcgGCUGUaCG-CGgaCCGCCUCa -3' miRNA: 3'- gGCGGCCa-CGACA-GCaGCg-GGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 31262 | 0.72 | 0.377079 |
Target: 5'- gCGCCGGgag-GUCGUCGCCCGgCg- -3' miRNA: 3'- gGCGGCCacgaCAGCAGCGGGUgGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 17590 | 0.72 | 0.377079 |
Target: 5'- gCCGCCGGcuggGC-GUCGgaggacuuccgCGCCgGCCUCg -3' miRNA: 3'- -GGCGGCCa---CGaCAGCa----------GCGGgUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 49070 | 0.72 | 0.384982 |
Target: 5'- uCCGCCGacGUGC--UCGUCGCCCagGCCaUCa -3' miRNA: 3'- -GGCGGC--CACGacAGCAGCGGG--UGG-AG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 7698 | 0.72 | 0.392995 |
Target: 5'- gCCGCCGGacGCccGUCGccggacgcUCGCCCGCCg- -3' miRNA: 3'- -GGCGGCCa-CGa-CAGC--------AGCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 133206 | 0.72 | 0.392995 |
Target: 5'- gCCGCCGGacGCccGUCGccggacgcUCGCCCGCCg- -3' miRNA: 3'- -GGCGGCCa-CGa-CAGC--------AGCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 58324 | 0.72 | 0.401115 |
Target: 5'- gCGCCGGggUGCUcGUCGaucgCGUCCACCa- -3' miRNA: 3'- gGCGGCC--ACGA-CAGCa---GCGGGUGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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