miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 138571 0.72 0.401115
Target:  5'- gCUGCUGGUGCcgGUCGUCGgcuCCCGCg-- -3'
miRNA:   3'- -GGCGGCCACGa-CAGCAGC---GGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 23689 0.72 0.401115
Target:  5'- -gGCCGGgguccGCUG-CGUgcgCGCCUACCUCu -3'
miRNA:   3'- ggCGGCCa----CGACaGCA---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 102130 0.72 0.401115
Target:  5'- cCCGCCGucGCUGUCGUaGUCCaugGCCUCc -3'
miRNA:   3'- -GGCGGCcaCGACAGCAgCGGG---UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111815 0.72 0.401115
Target:  5'- cCCGCggaGGUGUUgGUCGUC-CCCGCCg- -3'
miRNA:   3'- -GGCGg--CCACGA-CAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 72502 0.71 0.407688
Target:  5'- cCCGCCGGgccuaggcggcgGCgcucgGUCGcCGuCCCGCUUCg -3'
miRNA:   3'- -GGCGGCCa-----------CGa----CAGCaGC-GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 98321 0.71 0.409341
Target:  5'- gCGCgGGUGCUGgcucgCGUaCGCCgACCg- -3'
miRNA:   3'- gGCGgCCACGACa----GCA-GCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 67349 0.71 0.409341
Target:  5'- -aGCUGGUGCagacgauguUGUCGUC-CCCGCCg- -3'
miRNA:   3'- ggCGGCCACG---------ACAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 2556 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 33457 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 51404 0.71 0.417672
Target:  5'- gCCGCCGGcGCg--C-UCGCCCACCa- -3'
miRNA:   3'- -GGCGGCCaCGacaGcAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 119285 0.71 0.417672
Target:  5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3'
miRNA:   3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 123065 0.71 0.417672
Target:  5'- -aGCaCGG-GCcgGUCGUCGUCgGCCUCg -3'
miRNA:   3'- ggCG-GCCaCGa-CAGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 150186 0.71 0.417672
Target:  5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3'
miRNA:   3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 121320 0.71 0.434638
Target:  5'- gCGCgGGUGCUGcccacccggcUCGUgGCCUACCc- -3'
miRNA:   3'- gGCGgCCACGAC----------AGCAgCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 55242 0.71 0.438079
Target:  5'- cUCGCCGacGCcGUCGUgcggguggccgcgaaCGCCCGCCUCu -3'
miRNA:   3'- -GGCGGCcaCGaCAGCA---------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 104510 0.71 0.443269
Target:  5'- cCCGCgGGacggGCgGUCGUCGCgCGCC-Cg -3'
miRNA:   3'- -GGCGgCCa---CGaCAGCAGCGgGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 137656 0.71 0.451997
Target:  5'- -gGCCGGUG-UGUC-UCGCUCGCUUCc -3'
miRNA:   3'- ggCGGCCACgACAGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 19786 0.71 0.451997
Target:  5'- gCGCCGGgGCgaagaggGcCGcUCgGCCCACCUCg -3'
miRNA:   3'- gGCGGCCaCGa------CaGC-AG-CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 100910 0.71 0.451997
Target:  5'- gCGCgGGUGCaGgcgCG-CGCCCACCg- -3'
miRNA:   3'- gGCGgCCACGaCa--GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 14549 0.7 0.469727
Target:  5'- aCCGCgGGgGCggGcUCGUCGCCCGgggccugcucguCCUCg -3'
miRNA:   3'- -GGCGgCCaCGa-C-AGCAGCGGGU------------GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.