miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 130177 0.7 0.478725
Target:  5'- gCGCCGGcGCg--CcUCGUCCACCUCc -3'
miRNA:   3'- gGCGGCCaCGacaGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4669 0.7 0.478725
Target:  5'- gCGCCGGcGCg--CcUCGUCCACCUCc -3'
miRNA:   3'- gGCGGCCaCGacaGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 114033 0.7 0.487807
Target:  5'- gCCGUCGGcGCgcgCGUCGCucccgacggCCACCUCc -3'
miRNA:   3'- -GGCGGCCaCGacaGCAGCG---------GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 44594 0.7 0.487807
Target:  5'- cCCGCgacaGGUGgUGcUCGUgGCCCGCgUCc -3'
miRNA:   3'- -GGCGg---CCACgAC-AGCAgCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 27396 0.7 0.496968
Target:  5'- uCCGCCGGcGCcGcCGcCGCCgACCUg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 152904 0.7 0.496968
Target:  5'- uCCGCCGGcGCcGcCGcCGCCgACCUg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 55335 0.7 0.496968
Target:  5'- gCGUCGGaGCUG-CGgcggcaguUCGCCCGCCUg -3'
miRNA:   3'- gGCGGCCaCGACaGC--------AGCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 91619 0.7 0.506207
Target:  5'- aC-CCGGggggggaGCUGUCcauGUCGCUCGCCUCc -3'
miRNA:   3'- gGcGGCCa------CGACAG---CAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 3368 0.69 0.512717
Target:  5'- cCCGCCGGgaaccccGCgcccaUCGUgauaggcgacucgcCGCCCGCCUCc -3'
miRNA:   3'- -GGCGGCCa------CGac---AGCA--------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 34269 0.69 0.512717
Target:  5'- cCCGCCGGgaaccccGCgcccaUCGUgauaggcgacucgcCGCCCGCCUCc -3'
miRNA:   3'- -GGCGGCCa------CGac---AGCA--------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 49431 0.69 0.515518
Target:  5'- gCCGCCGcGUcGUggacaUGUCGUCcgguGCCCGCCa- -3'
miRNA:   3'- -GGCGGC-CA-CG-----ACAGCAG----CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 31209 0.69 0.515518
Target:  5'- cCCGCUGGUGCUGUaguaGUCgaaaacguaguGCCCgucgGCgUCg -3'
miRNA:   3'- -GGCGGCCACGACAg---CAG-----------CGGG----UGgAG- -5'
21505 3' -61.1 NC_004812.1 + 20805 0.69 0.515518
Target:  5'- gCGCCc--GC-GUCGgCGCCCGCCUCg -3'
miRNA:   3'- gGCGGccaCGaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 122645 0.69 0.524898
Target:  5'- gCCGCCcaccGGcgagGCUGUCGUC-CUCGuCCUCg -3'
miRNA:   3'- -GGCGG----CCa---CGACAGCAGcGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 129959 0.69 0.524898
Target:  5'- gUGCCGGUgaugaaggagcuGCUGUUGcgccgcgCGCCCgagGCCUCg -3'
miRNA:   3'- gGCGGCCA------------CGACAGCa------GCGGG---UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4451 0.69 0.524898
Target:  5'- gUGCCGGUgaugaaggagcuGCUGUUGcgccgcgCGCCCgagGCCUCg -3'
miRNA:   3'- gGCGGCCA------------CGACAGCa------GCGGG---UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 153546 0.69 0.524898
Target:  5'- gCCGCCcaccGGcgagGCUGUCGUC-CUCGuCCUCg -3'
miRNA:   3'- -GGCGG----CCa---CGACAGCAGcGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 111201 0.69 0.528668
Target:  5'- -gGCUGGUGCUcggcugguacGUCGUguucggggcgaacccCGCCCACCg- -3'
miRNA:   3'- ggCGGCCACGA----------CAGCA---------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 60011 0.69 0.534341
Target:  5'- uCCGCgGG-GCcGgCGUCGUCgACCUCg -3'
miRNA:   3'- -GGCGgCCaCGaCaGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 61523 0.69 0.543844
Target:  5'- aCCGCCcucGGggGUUGUCGUUGCCUAgCa- -3'
miRNA:   3'- -GGCGG---CCa-CGACAGCAGCGGGUgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.