miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 50261 0.66 0.718444
Target:  5'- gCCGUCGGUGUcGcUGUCGaCCCggcGCCUg -3'
miRNA:   3'- -GGCGGCCACGaCaGCAGC-GGG---UGGAg -5'
21505 3' -61.1 NC_004812.1 + 142473 0.66 0.718444
Target:  5'- -aGCCGGguccGCcGUUccccgucgaGUCGCCCGCCa- -3'
miRNA:   3'- ggCGGCCa---CGaCAG---------CAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 31328 0.66 0.718444
Target:  5'- gCGCgCGGcGCUcUCGcgcgCGCCCGCCg- -3'
miRNA:   3'- gGCG-GCCaCGAcAGCa---GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 138733 0.66 0.717494
Target:  5'- cCCGCgGcGUGCcgGcCgGUCGCCCccgcgguGCCUCu -3'
miRNA:   3'- -GGCGgC-CACGa-CaG-CAGCGGG-------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 25566 0.66 0.717494
Target:  5'- cUCGCCGG-GCUcgcggaagacgaaG-CGcCGCCCcGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGA-------------CaGCaGCGGG-UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 97558 0.66 0.708912
Target:  5'- uCCaGCCGGUGCUG-CGccggCGCgUgauggACCUCu -3'
miRNA:   3'- -GG-CGGCCACGACaGCa---GCGgG-----UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111331 0.66 0.708912
Target:  5'- cCUGUCGG-GggGUCGccCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCaCgaCAGCa-GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 72189 0.66 0.708912
Target:  5'- gCgGCCGGggGCcccggGUCGUCGCggggcguccgCgGCCUCg -3'
miRNA:   3'- -GgCGGCCa-CGa----CAGCAGCG----------GgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 128837 0.66 0.708912
Target:  5'- cCCGgCGG-GCUGg-GcCGCCCGCCc- -3'
miRNA:   3'- -GGCgGCCaCGACagCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 101511 0.66 0.703164
Target:  5'- aCCGCCGG-GUcgucgggcccccccaUGUgcaUGUCGCCCACg-- -3'
miRNA:   3'- -GGCGGCCaCG---------------ACA---GCAGCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 46388 0.66 0.699321
Target:  5'- gCCGCCGGgGCcGUUGcCGUCgGCgUCu -3'
miRNA:   3'- -GGCGGCCaCGaCAGCaGCGGgUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 121032 0.66 0.699321
Target:  5'- gCCGUCgGGUGCcccCGcCGCCC-CCUCc -3'
miRNA:   3'- -GGCGG-CCACGacaGCaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 128092 0.66 0.697396
Target:  5'- gCCGCCGGgGCUGgucuuagguggccgCGgagcccccuuucccCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCaCGACa-------------GCa-------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 105403 0.66 0.693541
Target:  5'- gCGCCGGUGCcGgcgcucggCGgggcccggcgcccgCGCCCGCC-Cg -3'
miRNA:   3'- gGCGGCCACGaCa-------GCa-------------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 117637 0.66 0.689678
Target:  5'- gCCGCCGGgcgcgGCgggGUCGcggGCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa----CGa--CAGCag-CGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 148538 0.66 0.689678
Target:  5'- gCCGCCGGgcgcgGCgggGUCGcggGCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa----CGa--CAGCag-CGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 51119 0.66 0.689678
Target:  5'- gCCGCCGG-GCccgGUCGcCuGCuCCGuCCUCc -3'
miRNA:   3'- -GGCGGCCaCGa--CAGCaG-CG-GGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 17078 0.66 0.689678
Target:  5'- gCGCCccccguGGcGCUGUCccCGCCCcCCUCu -3'
miRNA:   3'- gGCGG------CCaCGACAGcaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 93625 0.66 0.689678
Target:  5'- gCGCgUGGUGgC-GUCGaCGCCCcCCUCg -3'
miRNA:   3'- gGCG-GCCAC-GaCAGCaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 145626 0.67 0.679991
Target:  5'- uCCGCCGGgGCg--CGccagcaCGgCCACCUCa -3'
miRNA:   3'- -GGCGGCCaCGacaGCa-----GCgGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.