miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 153135 0.67 0.679991
Target:  5'- cCCGCCGc-GCUGaCGgcgcgacCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCcaCGACaGCa------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 120190 0.67 0.679991
Target:  5'- cCCGCCGuGUcccuGCUGcgCGgCGCCCGgcguCCUCc -3'
miRNA:   3'- -GGCGGC-CA----CGACa-GCaGCGGGU----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 122873 0.67 0.679991
Target:  5'- gCGCCGcGUGCggggGUCGUUGaCCACg-- -3'
miRNA:   3'- gGCGGC-CACGa---CAGCAGCgGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 145626 0.67 0.679991
Target:  5'- uCCGCCGGgGCg--CGccagcaCGgCCACCUCa -3'
miRNA:   3'- -GGCGGCCaCGacaGCa-----GCgGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 129564 0.67 0.679991
Target:  5'- gCCGCgGcGUcGUcGUCGUCGUCguCCUCg -3'
miRNA:   3'- -GGCGgC-CA-CGaCAGCAGCGGguGGAG- -5'
21505 3' -61.1 NC_004812.1 + 153774 0.67 0.679991
Target:  5'- gCGCCGcGUGCggggGUCGUUGaCCACg-- -3'
miRNA:   3'- gGCGGC-CACGa---CAGCAGCgGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 151091 0.67 0.679991
Target:  5'- cCCGCCGuGUcccuGCUGcgCGgCGCCCGgcguCCUCc -3'
miRNA:   3'- -GGCGGC-CA----CGACa-GCaGCGGGU----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 27627 0.67 0.679991
Target:  5'- cCCGCCGc-GCUGaCGgcgcgacCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCcaCGACaGCa------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 98786 0.67 0.679991
Target:  5'- gCCGCCGaGgcggcGCUGagGUgGCCCAcgaggccgaggcCCUCg -3'
miRNA:   3'- -GGCGGC-Ca----CGACagCAgCGGGU------------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 4055 0.67 0.679991
Target:  5'- gCCGCgGcGUcGUcGUCGUCGUCguCCUCg -3'
miRNA:   3'- -GGCGgC-CA-CGaCAGCAGCGGguGGAG- -5'
21505 3' -61.1 NC_004812.1 + 26593 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 102016 0.67 0.670268
Target:  5'- gCGCCGccGCgaggGUgGcUCGUCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGa---CAgC-AGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 152101 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 67499 0.67 0.670268
Target:  5'- cCCG-CGG-GCcGUCGucUCGCgCGCCUCg -3'
miRNA:   3'- -GGCgGCCaCGaCAGC--AGCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 3631 0.67 0.670268
Target:  5'- gCGCCGGcggGCgcgcggCGcCGCCCGCgUCu -3'
miRNA:   3'- gGCGGCCa--CGaca---GCaGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 82733 0.67 0.670268
Target:  5'- gCCGCCGa-GCUGUaCGcCGCCCugACCg- -3'
miRNA:   3'- -GGCGGCcaCGACA-GCaGCGGG--UGGag -5'
21505 3' -61.1 NC_004812.1 + 129139 0.67 0.670268
Target:  5'- gCGCCGGcggGCgcgcggCGcCGCCCGCgUCu -3'
miRNA:   3'- gGCGGCCa--CGaca---GCaGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 37108 0.67 0.660517
Target:  5'- gCCGUcgaggCGGUGUUGgcgcccgCGUCGgCCGCCg- -3'
miRNA:   3'- -GGCG-----GCCACGACa------GCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 79061 0.67 0.660517
Target:  5'- gCgGCCGGacGCguuUGcUCGUCGCCCcccgauCCUCg -3'
miRNA:   3'- -GgCGGCCa-CG---AC-AGCAGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 95499 0.67 0.660517
Target:  5'- gCGCCGGcGCgccgCGggGCgCCGCCUCg -3'
miRNA:   3'- gGCGGCCaCGaca-GCagCG-GGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.