miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 7300 0.67 0.660517
Target:  5'- gCCGCCuGUcGCc--CGUCGCCCGgcCCUCu -3'
miRNA:   3'- -GGCGGcCA-CGacaGCAGCGGGU--GGAG- -5'
21505 3' -61.1 NC_004812.1 + 38201 0.67 0.660517
Target:  5'- gCCGCCuGUcGCc--CGUCGCCCGgcCCUCu -3'
miRNA:   3'- -GGCGGcCA-CGacaGCAGCGGGU--GGAG- -5'
21505 3' -61.1 NC_004812.1 + 99927 0.67 0.650745
Target:  5'- gCCGCCGaagaUGCgcGUCGacgccgCGCCCGCgUCg -3'
miRNA:   3'- -GGCGGCc---ACGa-CAGCa-----GCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 42385 0.67 0.650745
Target:  5'- gUCGCCGGUGUUccccgcccucGUCGgcaUCGUCCggggucACCUCc -3'
miRNA:   3'- -GGCGGCCACGA----------CAGC---AGCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 118335 0.67 0.649767
Target:  5'- aCGCCGGagcaguuUGCgcgGcCGgacaaCGCCCACCUg -3'
miRNA:   3'- gGCGGCC-------ACGa--CaGCa----GCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 69452 0.67 0.640959
Target:  5'- -aGCCGGUacagGCgGUCGgagCGCCgCACCa- -3'
miRNA:   3'- ggCGGCCA----CGaCAGCa--GCGG-GUGGag -5'
21505 3' -61.1 NC_004812.1 + 59831 0.67 0.640959
Target:  5'- gCgGCCGGUGCgaaccCGcCGCCU-CCUCg -3'
miRNA:   3'- -GgCGGCCACGaca--GCaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 5854 0.67 0.638022
Target:  5'- aCCGCgGcUGCcGUCuacacgaucgcgcgGUCGCCgGCCUCa -3'
miRNA:   3'- -GGCGgCcACGaCAG--------------CAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 131362 0.67 0.638022
Target:  5'- aCCGCgGcUGCcGUCuacacgaucgcgcgGUCGCCgGCCUCa -3'
miRNA:   3'- -GGCGgCcACGaCAG--------------CAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 29613 0.67 0.631167
Target:  5'- gCCgGCCGGcGCUccGcCGcCGCCCGCCg- -3'
miRNA:   3'- -GG-CGGCCaCGA--CaGCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 96363 0.67 0.631167
Target:  5'- cCCGaCGGUGCUGcCG-CGgCCCACgaUCg -3'
miRNA:   3'- -GGCgGCCACGACaGCaGC-GGGUGg-AG- -5'
21505 3' -61.1 NC_004812.1 + 76295 0.67 0.631167
Target:  5'- gCCGCCuccagcagcgcGGcGCgGUCGcCGUCCGCCUg -3'
miRNA:   3'- -GGCGG-----------CCaCGaCAGCaGCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 66743 0.67 0.631167
Target:  5'- gCCGUCGGaGCaG-CG-CGCCgGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 135498 0.67 0.631167
Target:  5'- gCCGCCuggcugGGUGCggcucUGUCGgCGUcuucgCCGCCUCg -3'
miRNA:   3'- -GGCGG------CCACG-----ACAGCaGCG-----GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 155121 0.67 0.631167
Target:  5'- gCCgGCCGGcGCUccGcCGcCGCCCGCCg- -3'
miRNA:   3'- -GG-CGGCCaCGA--CaGCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 130005 0.68 0.621376
Target:  5'- gUCGUCGGUGac--CGUCGCCCGCg-- -3'
miRNA:   3'- -GGCGGCCACgacaGCAGCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 106308 0.68 0.611591
Target:  5'- aCGagaaaGGUGUUGUCGggcgucUCGCCCuCCUCc -3'
miRNA:   3'- gGCgg---CCACGACAGC------AGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 141831 0.68 0.608659
Target:  5'- gCGCgGGUcggcggggacgcgaGCgUGUCGUCGCCC-CCg- -3'
miRNA:   3'- gGCGgCCA--------------CG-ACAGCAGCGGGuGGag -5'
21505 3' -61.1 NC_004812.1 + 92558 0.68 0.601822
Target:  5'- aUCGCCGGcacggcccgugGCcGUCGUCGCCUGgCUg -3'
miRNA:   3'- -GGCGGCCa----------CGaCAGCAGCGGGUgGAg -5'
21505 3' -61.1 NC_004812.1 + 141167 0.68 0.600846
Target:  5'- aUCGCCGcGguucUGCUGUCGcuggcgguugcgcUCGCCCGCgUUc -3'
miRNA:   3'- -GGCGGC-C----ACGACAGC-------------AGCGGGUGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.