miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 427 0.66 0.718444
Target:  5'- gCGCgCGGcGCUcUCGcgcgCGCCCGCCg- -3'
miRNA:   3'- gGCG-GCCaCGAcAGCa---GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 2556 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 3368 0.69 0.512717
Target:  5'- cCCGCCGGgaaccccGCgcccaUCGUgauaggcgacucgcCGCCCGCCUCc -3'
miRNA:   3'- -GGCGGCCa------CGac---AGCA--------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 3631 0.67 0.670268
Target:  5'- gCGCCGGcggGCgcgcggCGcCGCCCGCgUCu -3'
miRNA:   3'- gGCGGCCa--CGaca---GCaGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 3986 0.66 0.718444
Target:  5'- gCGCCGGccgggcaccUGCUcUCGcCGCCgcucCGCCUCc -3'
miRNA:   3'- gGCGGCC---------ACGAcAGCaGCGG----GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4055 0.67 0.679991
Target:  5'- gCCGCgGcGUcGUcGUCGUCGUCguCCUCg -3'
miRNA:   3'- -GGCGgC-CA-CGaCAGCAGCGGguGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4451 0.69 0.524898
Target:  5'- gUGCCGGUgaugaaggagcuGCUGUUGcgccgcgCGCCCgagGCCUCg -3'
miRNA:   3'- gGCGGCCA------------CGACAGCa------GCGGG---UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4605 0.69 0.553402
Target:  5'- aCUGCCGc-GCcG-CGUCGCCCAgCUCg -3'
miRNA:   3'- -GGCGGCcaCGaCaGCAGCGGGUgGAG- -5'
21505 3' -61.1 NC_004812.1 + 4669 0.7 0.478725
Target:  5'- gCGCCGGcGCg--CcUCGUCCACCUCc -3'
miRNA:   3'- gGCGGCCaCGacaGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 5781 0.69 0.543844
Target:  5'- -aGCgCGGg---GUCGgCGCCCGCCUCg -3'
miRNA:   3'- ggCG-GCCacgaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 5854 0.67 0.638022
Target:  5'- aCCGCgGcUGCcGUCuacacgaucgcgcgGUCGCCgGCCUCa -3'
miRNA:   3'- -GGCGgCcACGaCAG--------------CAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 7300 0.67 0.660517
Target:  5'- gCCGCCuGUcGCc--CGUCGCCCGgcCCUCu -3'
miRNA:   3'- -GGCGGcCA-CGacaGCAGCGGGU--GGAG- -5'
21505 3' -61.1 NC_004812.1 + 7698 0.72 0.392995
Target:  5'- gCCGCCGGacGCccGUCGccggacgcUCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCa-CGa-CAGC--------AGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 7734 0.75 0.242658
Target:  5'- gCGCCGG-GCgagGcCGggggCGCCCGCCUCc -3'
miRNA:   3'- gGCGGCCaCGa--CaGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 9089 0.69 0.563009
Target:  5'- uCCGUCGGUcGUU-UCGcCGgCCGCCUCg -3'
miRNA:   3'- -GGCGGCCA-CGAcAGCaGCgGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 9450 0.68 0.57266
Target:  5'- gCGCCuucuGGUGCUGUC-UgGCCCACg-- -3'
miRNA:   3'- gGCGG----CCACGACAGcAgCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 13221 0.69 0.563009
Target:  5'- cUCGCCcugGGUcuucacgaaGCUGUCGUCGCgCagcacgGCCUCg -3'
miRNA:   3'- -GGCGG---CCA---------CGACAGCAGCGgG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 13626 0.68 0.58235
Target:  5'- -gGCUGGcGU--UCGUCGCCC-CCUCg -3'
miRNA:   3'- ggCGGCCaCGacAGCAGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 14549 0.7 0.469727
Target:  5'- aCCGCgGGgGCggGcUCGUCGCCCGgggccugcucguCCUCg -3'
miRNA:   3'- -GGCGgCCaCGa-C-AGCAGCGGGU------------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 16501 0.69 0.563009
Target:  5'- gCGUCcGUGCUGcgCG-CGCCCGCCa- -3'
miRNA:   3'- gGCGGcCACGACa-GCaGCGGGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.