miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 17078 0.66 0.689678
Target:  5'- gCGCCccccguGGcGCUGUCccCGCCCcCCUCu -3'
miRNA:   3'- gGCGG------CCaCGACAGcaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 17590 0.72 0.377079
Target:  5'- gCCGCCGGcuggGC-GUCGgaggacuuccgCGCCgGCCUCg -3'
miRNA:   3'- -GGCGGCCa---CGaCAGCa----------GCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 17636 0.69 0.563009
Target:  5'- gCCGUCGGUGCcggggcuucgGUCGccggcggcUCGCCC-UCUCg -3'
miRNA:   3'- -GGCGGCCACGa---------CAGC--------AGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 19786 0.71 0.451997
Target:  5'- gCGCCGGgGCgaagaggGcCGcUCgGCCCACCUCg -3'
miRNA:   3'- gGCGGCCaCGa------CaGC-AG-CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 20805 0.69 0.515518
Target:  5'- gCGCCc--GC-GUCGgCGCCCGCCUCg -3'
miRNA:   3'- gGCGGccaCGaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 23689 0.72 0.401115
Target:  5'- -gGCCGGgguccGCUG-CGUgcgCGCCUACCUCu -3'
miRNA:   3'- ggCGGCCa----CGACaGCA---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 25566 0.66 0.717494
Target:  5'- cUCGCCGG-GCUcgcggaagacgaaG-CGcCGCCCcGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGA-------------CaGCaGCGGG-UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 25825 0.69 0.563009
Target:  5'- uCCGCCuGGUuCUGg-GUCGCC-GCCUCg -3'
miRNA:   3'- -GGCGG-CCAcGACagCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 26593 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 27396 0.7 0.496968
Target:  5'- uCCGCCGGcGCcGcCGcCGCCgACCUg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 27627 0.67 0.679991
Target:  5'- cCCGCCGc-GCUGaCGgcgcgacCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCcaCGACaGCa------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 28193 0.68 0.58235
Target:  5'- uUCGCCGGcGCcGUCGaguaccUCGgCCugCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCAGC------AGCgGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 28197 0.74 0.280133
Target:  5'- aCCGCCGGUGCgcgaucagaaagucgCGUCGCuCCGCUUg -3'
miRNA:   3'- -GGCGGCCACGaca------------GCAGCG-GGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 29613 0.67 0.631167
Target:  5'- gCCgGCCGGcGCUccGcCGcCGCCCGCCg- -3'
miRNA:   3'- -GG-CGGCCaCGA--CaGCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 29980 0.74 0.27204
Target:  5'- gCUGCCGGagGCUGcCGUCGCCCucgaugGCCa- -3'
miRNA:   3'- -GGCGGCCa-CGACaGCAGCGGG------UGGag -5'
21505 3' -61.1 NC_004812.1 + 31209 0.69 0.515518
Target:  5'- cCCGCUGGUGCUGUaguaGUCgaaaacguaguGCCCgucgGCgUCg -3'
miRNA:   3'- -GGCGGCCACGACAg---CAG-----------CGGG----UGgAG- -5'
21505 3' -61.1 NC_004812.1 + 31262 0.72 0.377079
Target:  5'- gCGCCGGgag-GUCGUCGCCCGgCg- -3'
miRNA:   3'- gGCGGCCacgaCAGCAGCGGGUgGag -5'
21505 3' -61.1 NC_004812.1 + 31328 0.66 0.718444
Target:  5'- gCGCgCGGcGCUcUCGcgcgCGCCCGCCg- -3'
miRNA:   3'- gGCG-GCCaCGAcAGCa---GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 33457 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 33898 0.66 0.737297
Target:  5'- uCgGCCGucGCgaUCGcCGCCCGCCUCc -3'
miRNA:   3'- -GgCGGCcaCGacAGCaGCGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.