miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 34269 0.69 0.512717
Target:  5'- cCCGCCGGgaaccccGCgcccaUCGUgauaggcgacucgcCGCCCGCCUCc -3'
miRNA:   3'- -GGCGGCCa------CGac---AGCA--------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 34887 0.66 0.727908
Target:  5'- gCGCCGGcccgggcaccUGCUcUCGcCGCCgcucCGCCUCc -3'
miRNA:   3'- gGCGGCC----------ACGAcAGCaGCGG----GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 36682 0.69 0.543844
Target:  5'- -aGCgCGGg---GUCGgCGCCCGCCUCg -3'
miRNA:   3'- ggCG-GCCacgaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 37108 0.67 0.660517
Target:  5'- gCCGUcgaggCGGUGUUGgcgcccgCGUCGgCCGCCg- -3'
miRNA:   3'- -GGCG-----GCCACGACa------GCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 38201 0.67 0.660517
Target:  5'- gCCGCCuGUcGCc--CGUCGCCCGgcCCUCu -3'
miRNA:   3'- -GGCGGcCA-CGacaGCAGCGGGU--GGAG- -5'
21505 3' -61.1 NC_004812.1 + 38635 0.75 0.242658
Target:  5'- gCGCCGG-GCgagGcCGggggCGCCCGCCUCc -3'
miRNA:   3'- gGCGGCCaCGa--CaGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 42385 0.67 0.650745
Target:  5'- gUCGCCGGUGUUccccgcccucGUCGgcaUCGUCCggggucACCUCc -3'
miRNA:   3'- -GGCGGCCACGA----------CAGC---AGCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 43568 0.66 0.718444
Target:  5'- aCGCCGGccgcgGCcGUcCGUCcggcgcGCCCGcCCUCg -3'
miRNA:   3'- gGCGGCCa----CGaCA-GCAG------CGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 43965 0.74 0.278248
Target:  5'- uCCGCUGGUGgaGUCcgaguccccgcgGUCGCCCgaccggccgGCCUCc -3'
miRNA:   3'- -GGCGGCCACgaCAG------------CAGCGGG---------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 44594 0.7 0.487807
Target:  5'- cCCGCgacaGGUGgUGcUCGUgGCCCGCgUCc -3'
miRNA:   3'- -GGCGg---CCACgAC-AGCAgCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 46388 0.66 0.699321
Target:  5'- gCCGCCGGgGCcGUUGcCGUCgGCgUCu -3'
miRNA:   3'- -GGCGGCCaCGaCAGCaGCGGgUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 49070 0.72 0.384982
Target:  5'- uCCGCCGacGUGC--UCGUCGCCCagGCCaUCa -3'
miRNA:   3'- -GGCGGC--CACGacAGCAGCGGG--UGG-AG- -5'
21505 3' -61.1 NC_004812.1 + 49431 0.69 0.515518
Target:  5'- gCCGCCGcGUcGUggacaUGUCGUCcgguGCCCGCCa- -3'
miRNA:   3'- -GGCGGC-CA-CG-----ACAGCAG----CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 50261 0.66 0.718444
Target:  5'- gCCGUCGGUGUcGcUGUCGaCCCggcGCCUg -3'
miRNA:   3'- -GGCGGCCACGaCaGCAGC-GGG---UGGAg -5'
21505 3' -61.1 NC_004812.1 + 51119 0.66 0.689678
Target:  5'- gCCGCCGG-GCccgGUCGcCuGCuCCGuCCUCc -3'
miRNA:   3'- -GGCGGCCaCGa--CAGCaG-CG-GGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 51404 0.71 0.417672
Target:  5'- gCCGCCGGcGCg--C-UCGCCCACCa- -3'
miRNA:   3'- -GGCGGCCaCGacaGcAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 52295 0.66 0.727908
Target:  5'- gCCGCCcccggaGGcGCcGUccccgcCGUCGCCCGCCg- -3'
miRNA:   3'- -GGCGG------CCaCGaCA------GCAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 54215 0.68 0.58235
Target:  5'- cCCGCgGGcGCUuccGUCGU-GCCCcCCUCc -3'
miRNA:   3'- -GGCGgCCaCGA---CAGCAgCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 54422 0.68 0.58235
Target:  5'- gCCGCCGGg--UGUCGauggGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCacgACAGCag--CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 55242 0.71 0.438079
Target:  5'- cUCGCCGacGCcGUCGUgcggguggccgcgaaCGCCCGCCUCu -3'
miRNA:   3'- -GGCGGCcaCGaCAGCA---------------GCGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.