miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 55335 0.7 0.496968
Target:  5'- gCGUCGGaGCUG-CGgcggcaguUCGCCCGCCUg -3'
miRNA:   3'- gGCGGCCaCGACaGC--------AGCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 56441 0.73 0.32488
Target:  5'- gCGCCGG-GCgaUCGUCGCCC-CCUg -3'
miRNA:   3'- gGCGGCCaCGacAGCAGCGGGuGGAg -5'
21505 3' -61.1 NC_004812.1 + 57145 0.68 0.592072
Target:  5'- gCCGCCgcGGUGCUGgggcugcgCGaCGCgguccaCCGCCUCc -3'
miRNA:   3'- -GGCGG--CCACGACa-------GCaGCG------GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 58194 0.68 0.57266
Target:  5'- cCCgGCCuGGaacacGCgGUCGUUGCCCGCCa- -3'
miRNA:   3'- -GG-CGG-CCa----CGaCAGCAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 58324 0.72 0.401115
Target:  5'- gCGCCGGggUGCUcGUCGaucgCGUCCACCa- -3'
miRNA:   3'- gGCGGCC--ACGA-CAGCa---GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 58445 1.11 0.000861
Target:  5'- gCCGCCGGUGCUGUCGUCGCCCACCUCg -3'
miRNA:   3'- -GGCGGCCACGACAGCAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 59831 0.67 0.640959
Target:  5'- gCgGCCGGUGCgaaccCGcCGCCU-CCUCg -3'
miRNA:   3'- -GgCGGCCACGaca--GCaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 60011 0.69 0.534341
Target:  5'- uCCGCgGG-GCcGgCGUCGUCgACCUCg -3'
miRNA:   3'- -GGCGgCCaCGaCaGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 61523 0.69 0.543844
Target:  5'- aCCGCCcucGGggGUUGUCGUUGCCUAgCa- -3'
miRNA:   3'- -GGCGG---CCa-CGACAGCAGCGGGUgGag -5'
21505 3' -61.1 NC_004812.1 + 66743 0.67 0.631167
Target:  5'- gCCGUCGGaGCaG-CG-CGCCgGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 67349 0.71 0.409341
Target:  5'- -aGCUGGUGCagacgauguUGUCGUC-CCCGCCg- -3'
miRNA:   3'- ggCGGCCACG---------ACAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 67499 0.67 0.670268
Target:  5'- cCCG-CGG-GCcGUCGucUCGCgCGCCUCg -3'
miRNA:   3'- -GGCgGCCaCGaCAGC--AGCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 69452 0.67 0.640959
Target:  5'- -aGCCGGUacagGCgGUCGgagCGCCgCACCa- -3'
miRNA:   3'- ggCGGCCA----CGaCAGCa--GCGG-GUGGag -5'
21505 3' -61.1 NC_004812.1 + 69879 0.72 0.354032
Target:  5'- gCGCUGGUcGCcGUCGUCGUCCGgccgcuCCUCc -3'
miRNA:   3'- gGCGGCCA-CGaCAGCAGCGGGU------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 70497 0.68 0.58235
Target:  5'- --uCCGGaGCUGUCGUCGUaugcgccaacaCGCCUCg -3'
miRNA:   3'- ggcGGCCaCGACAGCAGCGg----------GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 72189 0.66 0.708912
Target:  5'- gCgGCCGGggGCcccggGUCGUCGCggggcguccgCgGCCUCg -3'
miRNA:   3'- -GgCGGCCa-CGa----CAGCAGCG----------GgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 72502 0.71 0.407688
Target:  5'- cCCGCCGGgccuaggcggcgGCgcucgGUCGcCGuCCCGCUUCg -3'
miRNA:   3'- -GGCGGCCa-----------CGa----CAGCaGC-GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 73722 0.69 0.553402
Target:  5'- cCCGCgaggaGGUGCgcgUGUCGgcCGCCCucaaccACCUCa -3'
miRNA:   3'- -GGCGg----CCACG---ACAGCa-GCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 76295 0.67 0.631167
Target:  5'- gCCGCCuccagcagcgcGGcGCgGUCGcCGUCCGCCUg -3'
miRNA:   3'- -GGCGG-----------CCaCGaCAGCaGCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 79055 0.69 0.557239
Target:  5'- gCGCCGGUcgugcccguggugcaGCUccucgaGUCGcUGCCCGCCUUu -3'
miRNA:   3'- gGCGGCCA---------------CGA------CAGCaGCGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.