miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 79061 0.67 0.660517
Target:  5'- gCgGCCGGacGCguuUGcUCGUCGCCCcccgauCCUCg -3'
miRNA:   3'- -GgCGGCCa-CG---AC-AGCAGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 79125 0.68 0.57266
Target:  5'- cCCGCCGG-GCccggGUCccaGCCCcGCCUCc -3'
miRNA:   3'- -GGCGGCCaCGa---CAGcagCGGG-UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 80222 0.66 0.727908
Target:  5'- cCCGCCGG-GCca---UCGCgCGCCUCg -3'
miRNA:   3'- -GGCGGCCaCGacagcAGCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 82733 0.67 0.670268
Target:  5'- gCCGCCGa-GCUGUaCGcCGCCCugACCg- -3'
miRNA:   3'- -GGCGGCcaCGACA-GCaGCGGG--UGGag -5'
21505 3' -61.1 NC_004812.1 + 91005 0.69 0.553402
Target:  5'- gUCGUCGGcGCaGUCGcCGUCgGCCUCc -3'
miRNA:   3'- -GGCGGCCaCGaCAGCaGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 91619 0.7 0.506207
Target:  5'- aC-CCGGggggggaGCUGUCcauGUCGCUCGCCUCc -3'
miRNA:   3'- gGcGGCCa------CGACAG---CAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 92558 0.68 0.601822
Target:  5'- aUCGCCGGcacggcccgugGCcGUCGUCGCCUGgCUg -3'
miRNA:   3'- -GGCGGCCa----------CGaCAGCAGCGGGUgGAg -5'
21505 3' -61.1 NC_004812.1 + 93625 0.66 0.689678
Target:  5'- gCGCgUGGUGgC-GUCGaCGCCCcCCUCg -3'
miRNA:   3'- gGCG-GCCAC-GaCAGCaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 93758 0.73 0.339229
Target:  5'- aCGUCGGcGCgGUCGaccaCGUCCACCUCg -3'
miRNA:   3'- gGCGGCCaCGaCAGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 94213 0.69 0.543844
Target:  5'- cCUGCCGGgucUGCUccucgccggCGUCGCCgGCCUg -3'
miRNA:   3'- -GGCGGCC---ACGAca-------GCAGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 95499 0.67 0.660517
Target:  5'- gCGCCGGcGCgccgCGggGCgCCGCCUCg -3'
miRNA:   3'- gGCGGCCaCGaca-GCagCG-GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 96363 0.67 0.631167
Target:  5'- cCCGaCGGUGCUGcCG-CGgCCCACgaUCg -3'
miRNA:   3'- -GGCgGCCACGACaGCaGC-GGGUGg-AG- -5'
21505 3' -61.1 NC_004812.1 + 97111 0.66 0.727908
Target:  5'- uCCGCCGGggGCcG-CGcCGCCgcggcggcgCGCCUCu -3'
miRNA:   3'- -GGCGGCCa-CGaCaGCaGCGG---------GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 97165 0.66 0.727908
Target:  5'- aUCGCCGGggucgucGUggggGUCGUCGUCguCCUg -3'
miRNA:   3'- -GGCGGCCa------CGa---CAGCAGCGGguGGAg -5'
21505 3' -61.1 NC_004812.1 + 97217 0.68 0.57266
Target:  5'- cCCGgCGGUGCccaCGUCGCUgGCCa- -3'
miRNA:   3'- -GGCgGCCACGacaGCAGCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 97558 0.66 0.708912
Target:  5'- uCCaGCCGGUGCUG-CGccggCGCgUgauggACCUCu -3'
miRNA:   3'- -GG-CGGCCACGACaGCa---GCGgG-----UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 98321 0.71 0.409341
Target:  5'- gCGCgGGUGCUGgcucgCGUaCGCCgACCg- -3'
miRNA:   3'- gGCGgCCACGACa----GCA-GCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 98786 0.67 0.679991
Target:  5'- gCCGCCGaGgcggcGCUGagGUgGCCCAcgaggccgaggcCCUCg -3'
miRNA:   3'- -GGCGGC-Ca----CGACagCAgCGGGU------------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 99927 0.67 0.650745
Target:  5'- gCCGCCGaagaUGCgcGUCGacgccgCGCCCGCgUCg -3'
miRNA:   3'- -GGCGGCc---ACGa-CAGCa-----GCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 100910 0.71 0.451997
Target:  5'- gCGCgGGUGCaGgcgCG-CGCCCACCg- -3'
miRNA:   3'- gGCGgCCACGaCa--GCaGCGGGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.