miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 128837 0.66 0.708912
Target:  5'- cCCGgCGG-GCUGg-GcCGCCCGCCc- -3'
miRNA:   3'- -GGCgGCCaCGACagCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 128092 0.66 0.697396
Target:  5'- gCCGCCGGgGCUGgucuuagguggccgCGgagcccccuuucccCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCaCGACa-------------GCa-------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 127479 0.66 0.737297
Target:  5'- aCCGCCcGUGC-GUCGcgaCGUCgACCUUg -3'
miRNA:   3'- -GGCGGcCACGaCAGCa--GCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 123065 0.71 0.417672
Target:  5'- -aGCaCGG-GCcgGUCGUCGUCgGCCUCg -3'
miRNA:   3'- ggCG-GCCaCGa-CAGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 122873 0.67 0.679991
Target:  5'- gCGCCGcGUGCggggGUCGUUGaCCACg-- -3'
miRNA:   3'- gGCGGC-CACGa---CAGCAGCgGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 122825 0.66 0.727908
Target:  5'- gCGCagCGG-GCgaUGUCGUCGgCCGCCg- -3'
miRNA:   3'- gGCG--GCCaCG--ACAGCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 122645 0.69 0.524898
Target:  5'- gCCGCCcaccGGcgagGCUGUCGUC-CUCGuCCUCg -3'
miRNA:   3'- -GGCGG----CCa---CGACAGCAGcGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 121897 0.72 0.361602
Target:  5'- gCUGCCGGUGUacgagGcgcUCGUCGCCUggcucacgcacGCCUCg -3'
miRNA:   3'- -GGCGGCCACGa----C---AGCAGCGGG-----------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 121320 0.71 0.434638
Target:  5'- gCGCgGGUGCUGcccacccggcUCGUgGCCUACCc- -3'
miRNA:   3'- gGCGgCCACGAC----------AGCAgCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 121032 0.66 0.699321
Target:  5'- gCCGUCgGGUGCcccCGcCGCCC-CCUCc -3'
miRNA:   3'- -GGCGG-CCACGacaGCaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 120190 0.67 0.679991
Target:  5'- cCCGCCGuGUcccuGCUGcgCGgCGCCCGgcguCCUCc -3'
miRNA:   3'- -GGCGGC-CA----CGACa-GCaGCGGGU----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 119285 0.71 0.417672
Target:  5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3'
miRNA:   3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 118335 0.67 0.649767
Target:  5'- aCGCCGGagcaguuUGCgcgGcCGgacaaCGCCCACCUg -3'
miRNA:   3'- gGCGGCC-------ACGa--CaGCa----GCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 117637 0.66 0.689678
Target:  5'- gCCGCCGGgcgcgGCgggGUCGcggGCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa----CGa--CAGCag-CGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 117398 0.68 0.57266
Target:  5'- gCGCCGGcccgcUGCUG-CGcUCGCUgGCCUg -3'
miRNA:   3'- gGCGGCC-----ACGACaGC-AGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 116607 0.75 0.254081
Target:  5'- gCCGCCGcGU-CUGUCGcggcCGCUCGCCUCu -3'
miRNA:   3'- -GGCGGC-CAcGACAGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 114033 0.7 0.487807
Target:  5'- gCCGUCGGcGCgcgCGUCGCucccgacggCCACCUCc -3'
miRNA:   3'- -GGCGGCCaCGacaGCAGCG---------GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 112596 0.66 0.726965
Target:  5'- gCCGCCGGagccuccUGCUGgccUCGgccaUGUgCACCUCc -3'
miRNA:   3'- -GGCGGCC-------ACGAC---AGCa---GCGgGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111815 0.72 0.401115
Target:  5'- cCCGCggaGGUGUUgGUCGUC-CCCGCCg- -3'
miRNA:   3'- -GGCGg--CCACGA-CAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 111331 0.66 0.708912
Target:  5'- cCUGUCGG-GggGUCGccCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCaCgaCAGCa-GCGGGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.