miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 111201 0.69 0.528668
Target:  5'- -gGCUGGUGCUcggcugguacGUCGUguucggggcgaacccCGCCCACCg- -3'
miRNA:   3'- ggCGGCCACGA----------CAGCA---------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 110294 0.66 0.727908
Target:  5'- aCUGgCGGcgGCUGUCGcccgcgCgGCCCGCCg- -3'
miRNA:   3'- -GGCgGCCa-CGACAGCa-----G-CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 110070 0.74 0.291004
Target:  5'- gCUGCCGaccGUGUUGUCGUUcgcgGCCCugCUCc -3'
miRNA:   3'- -GGCGGC---CACGACAGCAG----CGGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 106308 0.68 0.611591
Target:  5'- aCGagaaaGGUGUUGUCGggcgucUCGCCCuCCUCc -3'
miRNA:   3'- gGCgg---CCACGACAGC------AGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 105403 0.66 0.693541
Target:  5'- gCGCCGGUGCcGgcgcucggCGgggcccggcgcccgCGCCCGCC-Cg -3'
miRNA:   3'- gGCGGCCACGaCa-------GCa-------------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 104863 0.69 0.563009
Target:  5'- gCGCCGGcggccgcgGCggucGUCGUCGCCguCGCCgUCg -3'
miRNA:   3'- gGCGGCCa-------CGa---CAGCAGCGG--GUGG-AG- -5'
21505 3' -61.1 NC_004812.1 + 104510 0.71 0.443269
Target:  5'- cCCGCgGGacggGCgGUCGUCGCgCGCC-Cg -3'
miRNA:   3'- -GGCGgCCa---CGaCAGCAGCGgGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 104274 0.68 0.58235
Target:  5'- cCCGCCGGgGCgGgccgCGUauuuaagugcCGCCCACCcCg -3'
miRNA:   3'- -GGCGGCCaCGaCa---GCA----------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 102130 0.72 0.401115
Target:  5'- cCCGCCGucGCUGUCGUaGUCCaugGCCUCc -3'
miRNA:   3'- -GGCGGCcaCGACAGCAgCGGG---UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 102016 0.67 0.670268
Target:  5'- gCGCCGccGCgaggGUgGcUCGUCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGa---CAgC-AGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 101511 0.66 0.703164
Target:  5'- aCCGCCGG-GUcgucgggcccccccaUGUgcaUGUCGCCCACg-- -3'
miRNA:   3'- -GGCGGCCaCG---------------ACA---GCAGCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 101281 0.68 0.598895
Target:  5'- gCCGCCGcaGCUccgacgcccgggcGUCGgcccgcgccgaGCCCACCUCg -3'
miRNA:   3'- -GGCGGCcaCGA-------------CAGCag---------CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 100987 0.72 0.369285
Target:  5'- gCGCCGGcgGCUGUaCG-CGgaCCGCCUCa -3'
miRNA:   3'- gGCGGCCa-CGACA-GCaGCg-GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 100910 0.71 0.451997
Target:  5'- gCGCgGGUGCaGgcgCG-CGCCCACCg- -3'
miRNA:   3'- gGCGgCCACGaCa--GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 99927 0.67 0.650745
Target:  5'- gCCGCCGaagaUGCgcGUCGacgccgCGCCCGCgUCg -3'
miRNA:   3'- -GGCGGCc---ACGa-CAGCa-----GCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 98786 0.67 0.679991
Target:  5'- gCCGCCGaGgcggcGCUGagGUgGCCCAcgaggccgaggcCCUCg -3'
miRNA:   3'- -GGCGGC-Ca----CGACagCAgCGGGU------------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 98321 0.71 0.409341
Target:  5'- gCGCgGGUGCUGgcucgCGUaCGCCgACCg- -3'
miRNA:   3'- gGCGgCCACGACa----GCA-GCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 97558 0.66 0.708912
Target:  5'- uCCaGCCGGUGCUG-CGccggCGCgUgauggACCUCu -3'
miRNA:   3'- -GG-CGGCCACGACaGCa---GCGgG-----UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 97217 0.68 0.57266
Target:  5'- cCCGgCGGUGCccaCGUCGCUgGCCa- -3'
miRNA:   3'- -GGCgGCCACGacaGCAGCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 97165 0.66 0.727908
Target:  5'- aUCGCCGGggucgucGUggggGUCGUCGUCguCCUg -3'
miRNA:   3'- -GGCGGCCa------CGa---CAGCAGCGGguGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.