miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 152904 0.7 0.496968
Target:  5'- uCCGCCGGcGCcGcCGcCGCCgACCUg -3'
miRNA:   3'- -GGCGGCCaCGaCaGCaGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 51404 0.71 0.417672
Target:  5'- gCCGCCGGcGCg--C-UCGCCCACCa- -3'
miRNA:   3'- -GGCGGCCaCGacaGcAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 119285 0.71 0.417672
Target:  5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3'
miRNA:   3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 2556 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 104510 0.71 0.443269
Target:  5'- cCCGCgGGacggGCgGUCGUCGCgCGCC-Cg -3'
miRNA:   3'- -GGCGgCCa---CGaCAGCAGCGgGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 100910 0.71 0.451997
Target:  5'- gCGCgGGUGCaGgcgCG-CGCCCACCg- -3'
miRNA:   3'- gGCGgCCACGaCa--GCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 19786 0.71 0.451997
Target:  5'- gCGCCGGgGCgaagaggGcCGcUCgGCCCACCUCg -3'
miRNA:   3'- gGCGGCCaCGa------CaGC-AG-CGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 130177 0.7 0.478725
Target:  5'- gCGCCGGcGCg--CcUCGUCCACCUCc -3'
miRNA:   3'- gGCGGCCaCGacaGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 44594 0.7 0.487807
Target:  5'- cCCGCgacaGGUGgUGcUCGUgGCCCGCgUCc -3'
miRNA:   3'- -GGCGg---CCACgAC-AGCAgCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 98321 0.71 0.409341
Target:  5'- gCGCgGGUGCUGgcucgCGUaCGCCgACCg- -3'
miRNA:   3'- gGCGgCCACGACa----GCA-GCGGgUGGag -5'
21505 3' -61.1 NC_004812.1 + 102130 0.72 0.401115
Target:  5'- cCCGCCGucGCUGUCGUaGUCCaugGCCUCc -3'
miRNA:   3'- -GGCGGCcaCGACAGCAgCGGG---UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 23689 0.72 0.401115
Target:  5'- -gGCCGGgguccGCUG-CGUgcgCGCCUACCUCu -3'
miRNA:   3'- ggCGGCCa----CGACaGCA---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 29980 0.74 0.27204
Target:  5'- gCUGCCGGagGCUGcCGUCGCCCucgaugGCCa- -3'
miRNA:   3'- -GGCGGCCa-CGACaGCAGCGGG------UGGag -5'
21505 3' -61.1 NC_004812.1 + 28197 0.74 0.280133
Target:  5'- aCCGCCGGUGCgcgaucagaaagucgCGUCGCuCCGCUUg -3'
miRNA:   3'- -GGCGGCCACGaca------------GCAGCG-GGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 56441 0.73 0.32488
Target:  5'- gCGCCGG-GCgaUCGUCGCCC-CCUg -3'
miRNA:   3'- gGCGGCCaCGacAGCAGCGGGuGGAg -5'
21505 3' -61.1 NC_004812.1 + 31262 0.72 0.377079
Target:  5'- gCGCCGGgag-GUCGUCGCCCGgCg- -3'
miRNA:   3'- gGCGGCCacgaCAGCAGCGGGUgGag -5'
21505 3' -61.1 NC_004812.1 + 17590 0.72 0.377079
Target:  5'- gCCGCCGGcuggGC-GUCGgaggacuuccgCGCCgGCCUCg -3'
miRNA:   3'- -GGCGGCCa---CGaCAGCa----------GCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 133206 0.72 0.392995
Target:  5'- gCCGCCGGacGCccGUCGccggacgcUCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCa-CGa-CAGC--------AGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 58324 0.72 0.401115
Target:  5'- gCGCCGGggUGCUcGUCGaucgCGUCCACCa- -3'
miRNA:   3'- gGCGGCC--ACGA-CAGCa---GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 138571 0.72 0.401115
Target:  5'- gCUGCUGGUGCcgGUCGUCGgcuCCCGCg-- -3'
miRNA:   3'- -GGCGGCCACGa-CAGCAGC---GGGUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.