Results 41 - 60 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21505 | 3' | -61.1 | NC_004812.1 | + | 17590 | 0.72 | 0.377079 |
Target: 5'- gCCGCCGGcuggGC-GUCGgaggacuuccgCGCCgGCCUCg -3' miRNA: 3'- -GGCGGCCa---CGaCAGCa----------GCGGgUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 31262 | 0.72 | 0.377079 |
Target: 5'- gCGCCGGgag-GUCGUCGCCCGgCg- -3' miRNA: 3'- gGCGGCCacgaCAGCAGCGGGUgGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 56441 | 0.73 | 0.32488 |
Target: 5'- gCGCCGG-GCgaUCGUCGCCC-CCUg -3' miRNA: 3'- gGCGGCCaCGacAGCAGCGGGuGGAg -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 28197 | 0.74 | 0.280133 |
Target: 5'- aCCGCCGGUGCgcgaucagaaagucgCGUCGCuCCGCUUg -3' miRNA: 3'- -GGCGGCCACGaca------------GCAGCG-GGUGGAg -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 29980 | 0.74 | 0.27204 |
Target: 5'- gCUGCCGGagGCUGcCGUCGCCCucgaugGCCa- -3' miRNA: 3'- -GGCGGCCa-CGACaGCAGCGGG------UGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 2556 | 0.71 | 0.417672 |
Target: 5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3' miRNA: 3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 104510 | 0.71 | 0.443269 |
Target: 5'- cCCGCgGGacggGCgGUCGUCGCgCGCC-Cg -3' miRNA: 3'- -GGCGgCCa---CGaCAGCAGCGgGUGGaG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 60011 | 0.69 | 0.534341 |
Target: 5'- uCCGCgGG-GCcGgCGUCGUCgACCUCg -3' miRNA: 3'- -GGCGgCCaCGaCaGCAGCGGgUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 111201 | 0.69 | 0.528668 |
Target: 5'- -gGCUGGUGCUcggcugguacGUCGUguucggggcgaacccCGCCCACCg- -3' miRNA: 3'- ggCGGCCACGA----------CAGCA---------------GCGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 122645 | 0.69 | 0.524898 |
Target: 5'- gCCGCCcaccGGcgagGCUGUCGUC-CUCGuCCUCg -3' miRNA: 3'- -GGCGG----CCa---CGACAGCAGcGGGU-GGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 129959 | 0.69 | 0.524898 |
Target: 5'- gUGCCGGUgaugaaggagcuGCUGUUGcgccgcgCGCCCgagGCCUCg -3' miRNA: 3'- gGCGGCCA------------CGACAGCa------GCGGG---UGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 49431 | 0.69 | 0.515518 |
Target: 5'- gCCGCCGcGUcGUggacaUGUCGUCcgguGCCCGCCa- -3' miRNA: 3'- -GGCGGC-CA-CG-----ACAGCAG----CGGGUGGag -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 31209 | 0.69 | 0.515518 |
Target: 5'- cCCGCUGGUGCUGUaguaGUCgaaaacguaguGCCCgucgGCgUCg -3' miRNA: 3'- -GGCGGCCACGACAg---CAG-----------CGGG----UGgAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 3368 | 0.69 | 0.512717 |
Target: 5'- cCCGCCGGgaaccccGCgcccaUCGUgauaggcgacucgcCGCCCGCCUCc -3' miRNA: 3'- -GGCGGCCa------CGac---AGCA--------------GCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 91619 | 0.7 | 0.506207 |
Target: 5'- aC-CCGGggggggaGCUGUCcauGUCGCUCGCCUCc -3' miRNA: 3'- gGcGGCCa------CGACAG---CAGCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 152904 | 0.7 | 0.496968 |
Target: 5'- uCCGCCGGcGCcGcCGcCGCCgACCUg -3' miRNA: 3'- -GGCGGCCaCGaCaGCaGCGGgUGGAg -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 44594 | 0.7 | 0.487807 |
Target: 5'- cCCGCgacaGGUGgUGcUCGUgGCCCGCgUCc -3' miRNA: 3'- -GGCGg---CCACgAC-AGCAgCGGGUGgAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 130177 | 0.7 | 0.478725 |
Target: 5'- gCGCCGGcGCg--CcUCGUCCACCUCc -3' miRNA: 3'- gGCGGCCaCGacaGcAGCGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 19786 | 0.71 | 0.451997 |
Target: 5'- gCGCCGGgGCgaagaggGcCGcUCgGCCCACCUCg -3' miRNA: 3'- gGCGGCCaCGa------CaGC-AG-CGGGUGGAG- -5' |
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21505 | 3' | -61.1 | NC_004812.1 | + | 100910 | 0.71 | 0.451997 |
Target: 5'- gCGCgGGUGCaGgcgCG-CGCCCACCg- -3' miRNA: 3'- gGCGgCCACGaCa--GCaGCGGGUGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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