miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 58445 1.11 0.000861
Target:  5'- gCCGCCGGUGCUGUCGUCGCCCACCUCg -3'
miRNA:   3'- -GGCGGCCACGACAGCAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 33457 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 55242 0.71 0.438079
Target:  5'- cUCGCCGacGCcGUCGUgcggguggccgcgaaCGCCCGCCUCu -3'
miRNA:   3'- -GGCGGCcaCGaCAGCA---------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 133876 0.65 0.743819
Target:  5'- aCGCCGcGcGCgagacggGcUCGUCGCCCucggucgcggcgggGCCUCu -3'
miRNA:   3'- gGCGGC-CaCGa------C-AGCAGCGGG--------------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 110070 0.74 0.291004
Target:  5'- gCUGCCGaccGUGUUGUCGUUcgcgGCCCugCUCc -3'
miRNA:   3'- -GGCGGC---CACGACAGCAG----CGGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 131253 0.73 0.331997
Target:  5'- aCGCCGGcgaGCccgugGUCGcCGCCCACCg- -3'
miRNA:   3'- gGCGGCCa--CGa----CAGCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 69879 0.72 0.354032
Target:  5'- gCGCUGGUcGCcGUCGUCGUCCGgccgcuCCUCc -3'
miRNA:   3'- gGCGGCCA-CGaCAGCAGCGGGU------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 121897 0.72 0.361602
Target:  5'- gCUGCCGGUGUacgagGcgcUCGUCGCCUggcucacgcacGCCUCg -3'
miRNA:   3'- -GGCGGCCACGa----C---AGCAGCGGG-----------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 7698 0.72 0.392995
Target:  5'- gCCGCCGGacGCccGUCGccggacgcUCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCa-CGa-CAGC--------AGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 150186 0.71 0.417672
Target:  5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3'
miRNA:   3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 72502 0.71 0.407688
Target:  5'- cCCGCCGGgccuaggcggcgGCgcucgGUCGcCGuCCCGCUUCg -3'
miRNA:   3'- -GGCGGCCa-----------CGa----CAGCaGC-GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 49070 0.72 0.384982
Target:  5'- uCCGCCGacGUGC--UCGUCGCCCagGCCaUCa -3'
miRNA:   3'- -GGCGGC--CACGacAGCAGCGGG--UGG-AG- -5'
21505 3' -61.1 NC_004812.1 + 38635 0.75 0.242658
Target:  5'- gCGCCGG-GCgagGcCGggggCGCCCGCCUCc -3'
miRNA:   3'- gGCGGCCaCGa--CaGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 67349 0.71 0.409341
Target:  5'- -aGCUGGUGCagacgauguUGUCGUC-CCCGCCg- -3'
miRNA:   3'- ggCGGCCACG---------ACAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 116607 0.75 0.254081
Target:  5'- gCCGCCGcGU-CUGUCGcggcCGCUCGCCUCu -3'
miRNA:   3'- -GGCGGC-CAcGACAGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 100987 0.72 0.369285
Target:  5'- gCGCCGGcgGCUGUaCG-CGgaCCGCCUCa -3'
miRNA:   3'- gGCGGCCa-CGACA-GCaGCg-GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 123065 0.71 0.417672
Target:  5'- -aGCaCGG-GCcgGUCGUCGUCgGCCUCg -3'
miRNA:   3'- ggCG-GCCaCGa-CAGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 121320 0.71 0.434638
Target:  5'- gCGCgGGUGCUGcccacccggcUCGUgGCCUACCc- -3'
miRNA:   3'- gGCGgCCACGAC----------AGCAgCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 43965 0.74 0.278248
Target:  5'- uCCGCUGGUGgaGUCcgaguccccgcgGUCGCCCgaccggccgGCCUCc -3'
miRNA:   3'- -GGCGGCCACgaCAG------------CAGCGGG---------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 93758 0.73 0.339229
Target:  5'- aCGUCGGcGCgGUCGaccaCGUCCACCUCg -3'
miRNA:   3'- gGCGGCCaCGaCAGCa---GCGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.