miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 79055 0.69 0.557239
Target:  5'- gCGCCGGUcgugcccguggugcaGCUccucgaGUCGcUGCCCGCCUUu -3'
miRNA:   3'- gGCGGCCA---------------CGA------CAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 33457 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 116607 0.75 0.254081
Target:  5'- gCCGCCGcGU-CUGUCGcggcCGCUCGCCUCu -3'
miRNA:   3'- -GGCGGC-CAcGACAGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 73722 0.69 0.553402
Target:  5'- cCCGCgaggaGGUGCgcgUGUCGgcCGCCCucaaccACCUCa -3'
miRNA:   3'- -GGCGg----CCACG---ACAGCa-GCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 38635 0.75 0.242658
Target:  5'- gCGCCGG-GCgagGcCGggggCGCCCGCCUCc -3'
miRNA:   3'- gGCGGCCaCGa--CaGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 26593 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 110070 0.74 0.291004
Target:  5'- gCUGCCGaccGUGUUGUCGUUcgcgGCCCugCUCc -3'
miRNA:   3'- -GGCGGC---CACGACAGCAG----CGGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 118335 0.67 0.649767
Target:  5'- aCGCCGGagcaguuUGCgcgGcCGgacaaCGCCCACCUg -3'
miRNA:   3'- gGCGGCC-------ACGa--CaGCa----GCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 5854 0.67 0.638022
Target:  5'- aCCGCgGcUGCcGUCuacacgaucgcgcgGUCGCCgGCCUCa -3'
miRNA:   3'- -GGCGgCcACGaCAG--------------CAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 92558 0.68 0.601822
Target:  5'- aUCGCCGGcacggcccgugGCcGUCGUCGCCUGgCUg -3'
miRNA:   3'- -GGCGGCCa----------CGaCAGCAGCGGGUgGAg -5'
21505 3' -61.1 NC_004812.1 + 54422 0.68 0.58235
Target:  5'- gCCGCCGGg--UGUCGauggGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCacgACAGCag--CGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 148299 0.68 0.57266
Target:  5'- gCGCCGGcccgcUGCUG-CGcUCGCUgGCCUg -3'
miRNA:   3'- gGCGGCC-----ACGACaGC-AGCGGgUGGAg -5'
21505 3' -61.1 NC_004812.1 + 9450 0.68 0.57266
Target:  5'- gCGCCuucuGGUGCUGUC-UgGCCCACg-- -3'
miRNA:   3'- gGCGG----CCACGACAGcAgCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 153546 0.69 0.524898
Target:  5'- gCCGCCcaccGGcgagGCUGUCGUC-CUCGuCCUCg -3'
miRNA:   3'- -GGCGG----CCa---CGACAGCAGcGGGU-GGAG- -5'
21505 3' -61.1 NC_004812.1 + 34269 0.69 0.512717
Target:  5'- cCCGCCGGgaaccccGCgcccaUCGUgauaggcgacucgcCGCCCGCCUCc -3'
miRNA:   3'- -GGCGGCCa------CGac---AGCA--------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 4669 0.7 0.478725
Target:  5'- gCGCCGGcGCg--CcUCGUCCACCUCc -3'
miRNA:   3'- gGCGGCCaCGacaGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 55242 0.71 0.438079
Target:  5'- cUCGCCGacGCcGUCGUgcggguggccgcgaaCGCCCGCCUCu -3'
miRNA:   3'- -GGCGGCcaCGaCAGCA---------------GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 67349 0.71 0.409341
Target:  5'- -aGCUGGUGCagacgauguUGUCGUC-CCCGCCg- -3'
miRNA:   3'- ggCGGCCACG---------ACAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 7698 0.72 0.392995
Target:  5'- gCCGCCGGacGCccGUCGccggacgcUCGCCCGCCg- -3'
miRNA:   3'- -GGCGGCCa-CGa-CAGC--------AGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 69879 0.72 0.354032
Target:  5'- gCGCUGGUcGCcGUCGUCGUCCGgccgcuCCUCc -3'
miRNA:   3'- gGCGGCCA-CGaCAGCAGCGGGU------GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.